SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene73405

Length: 248 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene73405
CGTCGTGACCTTGGCTGTCACTCATGTTGGAGGAGAAACGGAAAGCTTTGATGGCAATGAAGTTAGAAGAACGTCGTGTTGTTGGCTGTGACTTTGAGTCTATGCAGCAACTCTCAGTTAAGAAAAACAGTGATGATGTATTTATAAAATTGGGTTCAGAGAAAGAAGCTGCCAGACGAAGAGATGCAGAAAAAGAGGAAAGGATCAGGAAGTCTATAAGCATCAATGAATTTCTAAAGCCTGCGGAA

Ace file of the UniGene sp_v2.0_unigene73405

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	nuclear rna binding protein	-	-	2.1006e-15	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	0.0	-
Sma3	Hyaluronan/mRNA-binding protein	IPR006861	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8Y7

Fln msg: Distance to subject end: 50 aas, atg_distance in limit (1-15): atg_distance = 2, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 75 - 135

Fln protein: MLEEKRKALMAMKLEERRVVGCDFESMQQLSVKKNSDDVFIKLGSEKEAARRRDAEKEERIRKSISINEFLKPAE

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTC_-_ATGTTGGAGGAGAAACGGAAAGCTTTGATGGCAATGAAGTTAGAAGAACGTCGTGTTGTTGGCTGTGACTTTGAGTCTATGCAGCAACTCTCAGTTAAGAAAAACAGTGATGATGTATTTATAAAATTGGGTTCAGAGAAAGAAGCTGCCAGACGAAGAGATGCAGAAAAAGAGGAAAGGATCAGGAAGTCTATAAGCATCAATGAATTTCTAAAGCCTGCGGAA

Fln Alignment:

AllPineV4_rep_c105461___LMLEEKRKALMAMK-LEERRVVGCDFESMQQLSVKKNSDD-VFIKLGSXXXXXXXXXXXXXXXXXXSISINEFLKPAE
D5A8Y7_______________IVREEKRKALLALKKVEERKVDVKEFESMQVLSNKKKDEDAMFIKLGPEKEKIKKIDAAENERVRKAVSINEFLKPAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain