SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene73284

Length: 327 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene73284
CGTCGTGACCTTGGCTGTCACTCATGGGTCTGTACTTTTCTGCCCATTGCTGTCCTCCATGCAGGGCTTTCACCCCTGTTTTGTCCGAAATCTATAAAAAGTTATCAGAGAAGGGGGACTTCGAGATTGTCTTCATTTCTGGAGATCATGATAAGAAGCCATTTGAGGAATACTAGCACACCATGCCATGGCTTGCCCTGCCATTCTCAGATAAAAAGATAAGGATGAAGCTTAATCGGGCCTTTCAGGTCGTTGTCATTCCATTCCTTGTTATTCTGGACAGAGAGATCAGAGTCATAAATACTGAAGGTGTGGAAATTATTAAAG

Ace file of the UniGene sp_v2.0_unigene73284

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein disulfide isomerase (PDI)-like protein 3 n=1 Tax=Cucumis melo RepID=Q5DMW9_CUCME	-	-	1.0e-24	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	protein disulfide isomerase -like protein 3	-	-	4.76441e-44	72%

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3	C1-like	IPR011424	-	-
Sma3		IPR012335	-	-
Sma3	Redoxin	IPR013740	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKG4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 116 aas, your sequence is shorter than subject: 108 - 586

Fln protein: S*PWLSLMGLYFSAHCCPPCRAFTPVLSEIYKKLSEKGDFEIVFISGDHDKKPFEEY*HTMPWLALPFSDKKIRMKLNRAFQVVVIPFLVILDREIRVINTEGVEIIK

Protein Length: 109

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGGTCTGTACTTTTCTGCCCATTGCTGTCCTCCATGCAGGGCTTTCACCCCTGTTTTGTCCGAAATCTATAAAAAGTTATCAGAGAAGGGGGACTTCGAGATTGTCTTCATTTCTGGAGATCATGATAAGAAGCCATTTGAGGAATACTAGCACACCATGCCATGGCTTGCCCTGCCATTCTCAGATAAAAAGATAAGGATGAAGCTTAATCGGGCCTTTCAGGTCGTTGTCATTCCATTCCTTGTTATTCTGGACAGAGAGATCAGAGTCATAAATACTGAAGGTGTGGAAATTATTAAAG

Fln Alignment:

AllPineV4_rep_c105242___MGLYFSAHCCPPCRAFTPVLSEIYKKLSEKGDFEIVFISGDHDKKPFEEY*HTMPWLALPFSDKKIRMKLNRAFQVVVIPFLVILDREIRVINTEGVEIIK
B8LKG4_______________VGLYFSAHWCPPCRSFTPVLSEIYKKLLEKGDFDIVFISADRDEKSFEEYHHTMPWLALPFSDENTRKNLNQAFQVHGIPCLVILDKEGRVITAKGVEIIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain