SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene73277

Length: 204 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene73277
CGTCGTGACCTTGGCTGTCACTCATGTTCGGAAGACACGATCATTTGATAGAATGAAAGTAGAAGCTGAAAAATGCTTAGCACAGAGTGAAAAATTTAAGAATGAGAAAGCAGAGTTTGAAACTGCTGTTTTTGCAAAGTTTGTTGCAGTGCTCAATTCAAAGAAAGCAAAGCTTCGAGAACTAAGGGAGAAATGCTTGCATTC

Ace file of the UniGene sp_v2.0_unigene73277

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	XRCC4 homolog [Populus nigra]	-	-	7.0e-16	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	dna repair protein xrcc4	-	-	1.20151e-30	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein C-terminus binding	GO:0008022	Molecular Function	1.20151e-30	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	0.0	-
Sma3	DNA double-strand break repair and VJ recombination XRCC4, C-terminal	IPR014751	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA21

Fln msg: Distance to subject end: 134 aas, your sequence is shorter than subject: 67 - 334

Fln protein: VVTLAVTHVRKTRSFDRMKVEAEKCLAQSEKFKNEKAEFETAVFAKFVAVLNSKKAKLRELREKCLH

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTCGGAAGACACGATCATTTGATAGAATGAAAGTAGAAGCTGAAAAATGCTTAGCACAGAGTGAAAAATTTAAGAATGAGAAAGCAGAGTTTGAAACTGCTGTTTTTGCAAAGTTTGTTGCAGTGCTCAATTCAAAGAAAGCAAAGCTTCGAGAACTAAGGGAGAAATGCTTGCATTC

Fln Alignment:

AllPineV4_rep_c105231___VRKTRSFDRMKVEAEKCLAQSEKFKNEKAEFETAVFAKFVAVLNSKKAKLRELREKCLH
D5AA21_______________VRKTRSFDRMKVEAEKCLAQSEKFKNEKAEFETTIFAKFVAVLNSKKAKLRELREKCLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain