SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72763

Length: 335 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene72763
CGTCGTGACCTTGGCTGTCACTCATGTTGCTCATCGCCTCTCCACCATCCGTAACGCGGACATGATTGCAGTAGTTCAAGCGGGTCAGGTGATAGAGACAGGTTCGCATGAAGATCTGATATATAAACCCAACGGAGCATACGCTACTTTGGTGCAACTGCAACAGGCCGCAGCAGATAATCCAGATGAGACAGCCGAAGGAGACAATATCCGACCCTCGTCTTTGAGAGCGAAGAGCTCTGGGTTATATAGTAGATCCAGTTCGAACAGGTCGGCAACAGGCCATGAAGAAAGGACCTATGAAGATAAAGCTCCTGCCGCCCCTTCATTCCGTC

Ace file of the UniGene sp_v2.0_unigene72763

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ABC transporter B family member 10 [Arabidopsis thaliana] sp\|Q9SGY1.2\|AB10B_ARATH RecName: Full=ABC transporter B family member 10; Short=ABC transporter ABCB.10; Short=AtABCB10; AltName: Full=Multidrug resistance protein 10; AltName: Full=P-glycoprotein	-	-	3.0e-12	58%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	50%
Blast2go	multidrug pheromone mdr abc transporter family	-	-	2.60975e-15	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	2.60975e-15	81%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	2.60975e-15	81%
Blast2go	Thiamine metabolism	00730	2.60975e-15	81%
Blast2go	Metabolic pathways	01100	2.60975e-15	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	2.60975e-15	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.60975e-15	81%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: STOP codon was not found. Distance to subject end: 54 aas, your sequence is shorter than subject: 111 - 1316

Fln protein: VVTLAVTHVAHRLSTIRNADMIAVVQAGQVIETGSHEDLIYKPNGAYATLVQLQQAAADNPDETAEGDNIRPSSLRAKSSGLYSRSSSNRSATGHEERTYEDKAPAAPSFR

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTGCTCATCGCCTCTCCACCATCCGTAACGCGGACATGATTGCAGTAGTTCAAGCGGGTCAGGTGATAGAGACAGGTTCGCATGAAGATCTGATATATAAACCCAACGGAGCATACGCTACTTTGGTGCAACTGCAACAGGCCGCAGCAGATAATCCAGATGAGACAGCCGAAGGAGACAATATCCGACCCTCGTCTTTGAGAGCGAAGAGCTCTGGGTTATATAGTAGATCCAGTTCGAACAGGTCGGCAACAGGCCATGAAGAAAGGACCTATGAAGATAAAGCTCCTGCCGCCCCTTCATTCCGTC

Fln Alignment:

AllPineV4_rep_c104168___VAHRLSTIRNADMIAVVQAGQVIETGSHEDLIYKPNGAYATLVQLQQAAADNPDETAEGDNI
E6Y0T0_______________VAHRLTTVRNADMIAVVQRGSIVEKGSHSQLITNPSGAYSQLIHLQESNRSKEQDSKDPDEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain