SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72663

Length: 344 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene72663
CGTCGTGACCTTGGCTGTCACTCAAGTTTTTGAGCATTGAAAGTGGTGGTTCGTTGTTTTTATATTCAAGCACTGATGATTCAACACTTCCTCAGGATTTGAACTCAGATGCTCCCCCTGTTTTGCAATTTGCATTTCAATATACAATCATTGTACCGCCTGAAGAAAATGTCAAGAAAGGATCTATTTCCCTAGACAGGCCAAAGTATTCACTTAAACGGAGATTGAGAATACGCACACTGCAGTATGGAATAGCGAGAAATATCAATGAACTGTATGACAGTGCTGATGCAGAAGTTATACTTTCTAACCTAGTTCACAAGGTAATTTCAGTCTTCCTTGGA

Ace file of the UniGene sp_v2.0_unigene72663

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sec23/sec24 transport family protein [Arabidopsis thaliana] gb\|AAD15598.1\| expressed protein [Arabidopsis thaliana] gb\|AAK96686.1\| Unknown protein [Arabidopsis thaliana] gb\|AAQ56782.1\| At2g27460 [Arabidopsis thaliana] gb\|AEC07999.1\| sec23/sec24 transport	-	-	3.0e-17	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	sec23 sec24 transport family protein	-	-	9.22138e-41	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	transport	GO:0006810	Biological Process	9.22138e-41	75%

Source	InterPros	Term	Type	Identity
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Zinc finger, Sec23/Sec24-type	IPR006895	-	-
Sma3	Sec23/Sec24, trunk domain	IPR006896	-	-
Sma3	Sec23/Sec24, helical domain	IPR006900	-	-
Sma3	Sec23/Sec24 beta-sandwich	IPR012990	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD51

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 224 aas, your sequence is shorter than subject: 114 - 369

Fln protein: S*PWLSLKFLSIESGGSLFLYSSTDDSTLPQDLNSDAPPVLQFAFQYTIIVPPEENVKKGSISLDRPKYSLKRRLRIRTLQYGIARNINELYDSADAEVILSNLVHKVISVFLG

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTTTGAGCATTGAAAGTGGTGGTTCGTTGTTTTTATATTCAAGCACTGATGATTCAACACTTCCTCAGGATTTGAACTCAGATGCTCCCCCTGTTTTGCAATTTGCATTTCAATATACAATCATTGTACCGCCTGAAGAAAATGTCAAGAAAGGATCTATTTCCCTAGACAGGCCAAAGTATTCACTTAAACGGAGATTGAGAATACGCACACTGCAGTATGGAATAGCGAGAAATATCAATGAACTGTATGACAGTGCTGATGCAGAAGTTATACTTTCTAACCTAGTTCACAAGGTAATTTCAGTCTTCCTTGGA

Fln Alignment:

AllPineV4_rep_c103911___NSDAPPVLQFAFQYTIIVPPEENVKKGSISLDRPKYSLKRRLRIRTLQYGIARNINELYDSADAEVILSNLVHKVISVFL
D5AD51_______________NSDAPPVLQFAFQYTVIVPPEENFKKGSISLDRPKYSLKRRLRIRTLQYGVARNLNELYDSADTEVILSILVHKVISASL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain