SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72459

Length: 256 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene72459
CGTCGTGACCTTGGCTGTCACTCATTTTGCTTTTTGAAGAAATGATACTGGCTGGCATGAAGCCAGACCATATCACTTTCATCGGTGTTATATCTGCGTGTAGTCGTGCAGGCCTAGTGGATGAAGGGCGTTACTATTTCGATTCAATGAGTCGAGTCCATTGCATTGAACCAACAGTAGACCATTATGTTTGCATGATTGATCTTCTTGGACGTGCAGGGCGCTTGGATGAGGCAGAAAGCTCATCGATGATATG

Ace file of the UniGene sp_v2.0_unigene72459

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SIT7.1\|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb\|AAD22682.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC06244.1\| pentatricopeptide repe	-	-	2.0e-19	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.98e-24	79%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3		IPR003612	-	-
Sma3	Putative methylase	IPR004557	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3		IPR008512	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3		IPR018169	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 209 aas, your sequence is shorter than subject: 84 - 370

Fln protein: S*PWLSLILLFEEMILAGMKPDHITFIGVISACSRAGLVDEGRYYFDSMSRVHCIEPTVDHYVCMIDLLGRAGRLDEAESSSMI

Protein Length: 85

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGCTTTTTGAAGAAATGATACTGGCTGGCATGAAGCCAGACCATATCACTTTCATCGGTGTTATATCTGCGTGTAGTCGTGCAGGCCTAGTGGATGAAGGGCGTTACTATTTCGATTCAATGAGTCGAGTCCATTGCATTGAACCAACAGTAGACCATTATGTTTGCATGATTGATCTTCTTGGACGTGCAGGGCGCTTGGATGAGGCAGAAAGCTCATCGATGATATG

Fln Alignment:

AllPineV4_rep_c103475___ILLFEEMILAGMKPDHITFIGVISACSRAGLVDEGRYYFDSMSRVHCIEPTVDHYVCMIDLLGRAGRLDEA
A9P0W0_______________VLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain