SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72437

Length: 447 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene72437
CGTCGTGACCTTGGCTGTCACTCAGGGGACAAGTCAGCTGAAAAGGTGTGTGTGGATTTGAAGATCAAGAGTCAAAATGACAAAGACCGTCTTGCCTTGGCTGTGATTGATTATTTGAAAGGTTTCACAGATGGAACAATGATAGTGGGAGAGTTCAAGGGCAAAAAAGTTCAAGAAGCAAAACCTCTAATCAGGAAAAAGCTTTTGGAGACAGGGGAGGCAGTCATGTATAGTGAACCCGAGAAAAAGGTAGTTTCTAGGTCAGGTGATGAATGCGTTGTGGCCCTTACTGACCAATGGTACATAATTTATGGTGAACCCGAGTGGAAAGAAAAAGCAGAGGAGTGTTTGTCCAAGATGGAGCTGTATTATGACGAGGCTAGACATGGATTTGAGCATACATTAAGCTGGCTTAATCAGTGGGCCTGTTCTAGATCATTCGGCCTT

Ace file of the UniGene sp_v2.0_unigene72437

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Leucyl-tRNA synthetase, putative n=2 Tax=Ricinus communis RepID=B9SKB0_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	78%
Blast2go	leucyl-trna cytoplasmic-like	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	87%
Blast2go	ligase activity	GO:0016874	Molecular Function	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Aminoacyl-tRNA synthetase, class Ia	IPR002300	-	-
Sma3	Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic	IPR004493	-	-
Sma3	Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding	IPR013155	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Methionyl/Leucyl tRNA synthetase	IPR015413	-	-
Sma3	Cysteinyl-tRNA synthetase	IPR015803	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HK37

Fln msg: Distance to subject end: 502 aas, your sequence is shorter than subject: 149 - 1085

Fln protein: RRDLGCHSGDKSAEKVCVDLKIKSQNDKDRLALAVIDYLKGFTDGTMIVGEFKGKKVQEAKPLIRKKLLETGEAVMYSEPEKKVVSRSGDECVVALTDQWYIIYGEPEWKEKAEECLSKMELYYDEARHGFEHTLSWLNQWACSRSFGL

Protein Length: 150

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGACAAGTCAGCTGAAAAGGTGTGTGTGGATTTGAAGATCAAGAGTCAAAATGACAAAGACCGTCTTGCCTTGGCTGTGATTGATTATTTGAAAGGTTTCACAGATGGAACAATGATAGTGGGAGAGTTCAAGGGCAAAAAAGTTCAAGAAGCAAAACCTCTAATCAGGAAAAAGCTTTTGGAGACAGGGGAGGCAGTCATGTATAGTGAACCCGAGAAAAAGGTAGTTTCTAGGTCAGGTGATGAATGCGTTGTGGCCCTTACTGACCAATGGTACATAATTTATGGTGAACCCGAGTGGAAAGAAAAAGCAGAGGAGTGTTTGTCCAAGATGGAGCTGTATTATGACGAGGCTAGACATGGATTTGAGCATACATTAAGCTGGCTTAATCAGTGGGCCTGTTCTAGATCATTCGGCCTT

Fln Alignment:

AllPineV4_rep_c103439___GDKSAEKVCVDLKIKSQNDKDRLALAV-IDYLKGFTDGTMIVGEFKGKKVQEAKPLIRKKLLETGEAVMYSEPEKKVVSRSGDECVVALTDQWYIIYGEPEWKEKAEECLSKMELYYDEARHGFEHTLSWLNQWACSRSFGL
F6HK37_______________GDRSAEKVCNDLKIKSQNEKEKLAEAKRLTYLRGFTEGTMLVGEFAGRKVQEAKPLIRSKLIEIGQAIVYSEPEKRVMSRSGDECVVALTDQWYIIYGEPEWKKLAEDCLSNMNLYSDETRHGFEHTLSWLNQWACSRSFGL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain