SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72325

Length: 322 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene72325
TGGCACTAGTGGTTATGGTTTGTGCTACCAAGGAAGACCAAGATTAGATAGAGTGTTGGATATTCGTGGCTTTGTTGATGCAGTTGGGTTAGAGATAGGGATCAGAGAAGATCTACAAGTGGGTATGTGTTTAACCTATTTGAAGGTGCAGTCAATTGGATGAGTAAGAACCAATCTGCAGTGGCATTATCAACTACAGAGGCAGAATACATGGCAACCACTCATGCAAGCAAGGAAGTAGTTTGGTTGCAAAGATTGTGTTCAAGTATGGGGTTAGTACAAGGATCTATAAGGATAGACTGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v2.0_unigene72325 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase n=1 Tax=Picea glauca RepID=Q9M5J7_PICGL	-	-	1.0e-31	68%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	77%
Blast2go	gag-pol polyprotein	-	-	2.88093e-31	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: Separated hits, possible frame ERROR between 82 and 85, Distance to subject end: 17 aas, your sequence is shorter than subject: 107 - 542

Fln protein: GTSGYGLCYQGRPRLDRVLDIRGFVDxxWVRDRDQRRSTSGYVFNLFEGAVNWMSKNQSAVALSTTEAEYMATTHASKEVVWLQRLCSSMGLVQGSIRIDCDSQGHD

Protein Length: 108

Fln nts: TGGCACTAGTGGTTATGGTTTGTGCTACCAAGGAAGACCAAGATTAGATAGAGTGTTGGATATTCGTGGCTTTGTTGATGCxxxTTGGGTTAGAGATAGGGATCAGAGAAGATCTACAAGTGGGTATGTGTTTAACCTATTTGAAGGTGCAGTCAATTGGATGAGTAAGAACCAATCTGCAGTGGCATTATCAACTACAGAGGCAGAATACATGGCAACCACTCATGCAAGCAAGGAAGTAGTTTGGTTGCAAAGATTGTGTTCAAGTATGGGGTTAGTACAAGGATCTATAAGGATAGACTGTGACAGCCAAGGTCACGACG

Fln Alignment:

AllPineV4_rep_c103231___GTSGYGLCYQGRPRLDRVLDIRGFVDAxWVRDRDQRRSTSGYVFNLFEGAVNWMSKNQSAVALSTTEAEYMATTHASKEVVWLQRLCSSMGLVQGSIRIDCDSQ
Q9M5J7_______________GTTSYGLCYQGRSGLDRVVDIHGFVDAxWVGDLDHIRSTSGYVFNLFGGAISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCSGIGLVQQVVRLDCEIQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain