SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72278

Length: 366 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene72278
CGTCGTGACCTTGGCTGTCACTCAACCTCTCCTTGGTATGCATTTATTTTCTATGTTTTACAAAATTTACAAGCTCCTCCTAGTTTGAAAAATACCAAAGCTAGATTACTCAAGTTAAAAGATGTGAAATTTTGCGTTTTAGATCAGGTTATGTATTGGAAAGATAATAGAGGTATTTTTCTAAATTGTTTATTAAAAGATGAAGCAGACTAAGTCATGGAAGAATTACATCAAGGGGATTGTGGAGGAGATTTATATTGGAAACCAACAGTGAACAAAATCCTGAGGGTTGGTTTCTACTGACCTACCTTGTTTGCATATGTTCATAAGAGAGTTTCAACTTGCCATTAGTGCCAGATATTTGAA

Ace file of the UniGene sp_v2.0_unigene72278

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Integrase, catalytic region; Ribonuclease H n=1 Tax=Medicago truncatula RepID=Q2HW89_MEDTR	-	-	2.0e-11	33%
FL-Next	tr=Integrase, catalytic region; Ribonuclease H; Medicago truncatula (Barrel medic) (Medicago tribuloides).	-	-	0.0	33%
Blast2go	catalytic region ribonuclease h	-	-	4.05073e-13	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2HW89

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 304 aas, your sequence is shorter than subject: 117 - 981

Fln protein: RRDLGCHSTSPWYAFIFYVLQNLQAPPSLKNTKARLLKLKDVKFCVLDQVMYWKDNRGIFLNCLLKDEAD*VMEELHQGDCGGDLYWKPTVNKILRVGFY*PTLFAYVHKRVSTCH*

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCTCTCCTTGGTATGCATTTATTTTCTATGTTTTACAAAATTTACAAGCTCCTCCTAGTTTGAAAAATACCAAAGCTAGATTACTCAAGTTAAAAGATGTGAAATTTTGCGTTTTAGATCAGGTTATGTATTGGAAAGATAATAGAGGTATTTTTCTAAATTGTTTATTAAAAGATGAAGCAGACTAAGTCATGGAAGAATTACATCAAGGGGATTGTGGAGGAGATTTATATTGGAAACCAACAGTGAACAAAATCCTGAGGGTTGGTTTCTACTGACCTACCTTGTTTGCATATGTTCATAAGAGAGTTTCAACTTGCCATTAGTGCCAGATATTTGAA

Fln Alignment:

AllPineV4_rep_c103154___PWYAFIFYVLQNLQAPPSLKNTKARLLKLKDVKFCVLDQVMYWKDNRGIFLNCLLKDEAD*VMEELHQGDCGGDLYWKPTVNKILRVGFY*PTLFAYVHKRVSTCH*CQIF
Q2HW89_______________PWYHDIQVFLQTQKYPPGASNKDKKTLRKLSSRFFLNEDVLYKRNFDGVLLRCVDKHEAEKLMREIHEGSFGTHSCGHAMAKKILRAGYYWITMHADCYNHAKRCHKCQIY

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain