SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72263

Length: 416 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene72263
CGTCGTGACCTTGGCTGTCACTCAGACGTGAGGGGTTTTGTTGGTCCAACGCGTGCAATCCCGTTCGTCCCAGTCTTAAAATGCATGGGTGGTGACTTGGCTGCATTCATTCAAAAAGTTTCGGACATCCCTTCACTGGAAGTCATCGGTGAACAGAGGTGGGGTTGCAGTAGTTGATCTGGTGGATCCATAGATCCAATCAGATCTGAAAATGGCGCTCACTGCACACATGAAGGTCCTCGTTTGGGCTTCGGCTCTTCTTCTGCTTTTCTTCGGGGCCAACTGTTTCTATCTTCCCGGCGTAGCACCCCATGATTTCAACAAGGGGGATGAGCTACAAGTGAAAGTGAACAAGTTGACTTCCATAAAGACTCAGCTTCCATATGAGTACTATTCTCTGCATTACTGCCCCTTGC

Ace file of the UniGene sp_v2.0_unigene72263

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	endomembrane family protein 70 [Arabidopsis thaliana] gb\|AED91602.1\| endomembrane family protein 70 [Arabidopsis thaliana]	-	-	1.0e-15	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	transmembrane 9 superfamily member 4-like	-	-	1.92593e-20	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	1.92593e-20	80%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	1.92593e-20	80%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	1.92593e-20	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.92593e-20	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nonaspanin (TM9SF)	IPR004240	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWV0

Fln msg: Distance to subject end: 591 aas, your sequence is shorter than subject: 68 - 664

Fln protein: MALTAHMKVLVWASALLLLFFGANCFYLPGVAPHDFNKGDELQVKVNKLTSIKTQLPYEYYSLHYCPL

Protein Length: 69

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGACGTGAGGGGTTTTGTTGGTCCAACGCGTGCAATCCCGTTCGTCCCAGTCTTAAAATGCATGGGTGGTGACTTGGCTGCATTCATTCAAAAAGTTTCGGACATCCCTTCACTGGAAGTCATCGGTGAACAGAGGTGGGGTTGCAGTAGTTGATCTGGTGGATCCATAGATCCAATCAGATCTGAAA_-_ATGGCGCTCACTGCACACATGAAGGTCCTCGTTTGGGCTTCGGCTCTTCTTCTGCTTTTCTTCGGGGCCAACTGTTTCTATCTTCCCGGCGTAGCACCCCATGATTTCAACAAGGGGGATGAGCTACAAGTGAAAGTGAACAAGTTGACTTCCATAAAGACTCAGCTTCCATATGAGTACTATTCTCTGCATTACTGCCCCTTGC

Fln Alignment:

AllPineV4_rep_c103126___ANCFYLPGVAPHDFNKGDELQVKVNKLTSIKTQLPYEYYSLHYC
A9NWV0_______________ANAFYLPGSYPHSYPQGSDLWVKVNSLTSVETELPYSYYSLPFC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain