SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72201

Length: 316 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene72201
CGTCGTGACCTTGGCTGTCACTCAGGAGATTTGGGGACATTCGTCCCAATAGTAATTGCCCTGACACTCGTCAATGGACTCGATCTGGGCACCACTCTGATCTTCACAGGATTATACAACGTGGTCACAGGGATTCTCTGGGGAGTTCCAATGCCTGTTCAGCCCATGAAATCCATTGCTGCAGTGGCAATAAGTGAGGGGGAGCACCTGGCGATTCCAGAGATAATGGCTGCAGCGGTAAAATACATAAGACAAAACCAGAATTTTGTCACTGGGAAGTCAGAGGGGGATAGGCCTTGGGTAGGGTGGGATGGTC

Ace file of the UniGene sp_v2.0_unigene72201

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	molybdate transporter 1 [Arabidopsis thaliana] gb\|AAD31368.1\| hypothetical protein [Arabidopsis thaliana] dbj\|BAD95122.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC07734.1\| molybdate transporter 1 [Arabidopsis thaliana]	-	-	1.0e-27	51%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	51%
Blast2go	sulfate transporter	-	-	3.57941e-36	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	molybdate ion transport	GO:0015689	Biological Process	3.57941e-36	64%
Blast2go	molybdate ion transmembrane transporter activity	GO:0015098	Molecular Function	3.57941e-36	64%
Blast2go	vacuole	GO:0005773	Cellular Component	3.57941e-36	64%
Blast2go	endomembrane system	GO:0012505	Cellular Component	3.57941e-36	64%
Blast2go	plasma membrane	GO:0005886	Cellular Component	3.57941e-36	64%
Blast2go	mitochondrion	GO:0005739	Cellular Component	3.57941e-36	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sulphate transporter	IPR011547	-	0.0	-
Sma3	WD40 repeat, conserved site	IPR019775	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: A9TVM2

Fln msg: Distance to subject end: 300 aas, atg_distance in limit (1-15): atg_distance = 7, W2: There is no M at the beginning, your sequence is shorter than subject: 105 - 454

Fln protein: RRDLGCHSGDLGTFVPIVIALTLVNGLDLGTTLIFTGLYNVVTGILWGVPMPVQPMKSIAAVAISEGEHLAIPEIMAAAVKYIRQNQNFVTGKSEGDRPWVGWDG

Protein Length: 106

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAGATTTGGGGACATTCGTCCCAATAGTAATTGCCCTGACACTCGTCAATGGACTCGATCTGGGCACCACTCTGATCTTCACAGGATTATACAACGTGGTCACAGGGATTCTCTGGGGAGTTCCAATGCCTGTTCAGCCCATGAAATCCATTGCTGCAGTGGCAATAAGTGAGGGGGAGCACCTGGCGATTCCAGAGATAATGGCTGCAGCGGTAAAATACATAAGACAAAACCAGAATTTTGTCACTGGGAAGTCAGAGGGGGATAGGCCTTGGGTAGGGTGGGATGGTC

Fln Alignment:

AllPineV4_rep_c103000___DLGCHSGDLGTFVPIVIALTLVNGLDLGTTLIFTGLYNVVTGILWGVPMPVQPMKSIAAVAISEGEHLAIPEIMAA-------------------------------------------AVKYIRQNQNFVTGKSEGDRPWVGWDG
A9TVM2_______________ELGGSVGDLGTFVPIVLALVLVNGLDLGTTLVFTGAYNVVTGLLFGVPMPVQPMKSIAAVAITEGDPLSLNQIMAAGLSTALVLAILGITGLMSVVNRLVPLPVVRGVQLSQGIAFGITAVKYILKEQDLTKGKTTGDRPWLGMDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain