SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72064

Length: 276 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene72064
CGTCGTGACCTTGGCTGTCACTGGCCGACGCGTTTCTATATCTGCTTCAGAAAGCCTGCTGGAAATTCCTCGAACTATATTCGTTTCCGAAGGTGCAATCGAAATATCACTTCGTCGATAGTAGAGATGGTAAAGAGTCCGACGTCCAGATTTATTCTCTTTTCTCTGAAACATATTCCCGGTGCATCAAAGGAAGCGTTTTGGATGGTTTGGGAATGGAATTTGTGCAATACAGTGCGGATCTGCTGTTATGCAGCGATGTTAACGAACAGCTGA

Ace file of the UniGene sp_v2.0_unigene72064

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	34%
Blast2go	binding protein	-	-	5.1204e-09	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HMB4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 475 aas, your sequence is shorter than subject: 91 - 827

Fln protein: S*PWLSLADAFLYLLQKACWKFLELYSFPKVQSKYHFVDSRDGKESDVQIYSLFSETYSRCIKGSVLDGLGMEFVQYSADLLLCSDVNEQL

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTGGCCGACGCGTTTCTATATCTGCTTCAGAAAGCCTGCTGGAAATTCCTCGAACTATATTCGTTTCCGAAGGTGCAATCGAAATATCACTTCGTCGATAGTAGAGATGGTAAAGAGTCCGACGTCCAGATTTATTCTCTTTTCTCTGAAACATATTCCCGGTGCATCAAAGGAAGCGTTTTGGATGGTTTGGGAATGGAATTTGTGCAATACAGTGCGGATCTGCTGTTATGCAGCGATGTTAACGAACAGCTGA

Fln Alignment:

AllPineV4_rep_c102744___LSLADAFLYLLQKACWKFLELYS--FPKVQSKYHFVDSRDGKESDVQIYSLFSETYSRCIKGSVLDGLGMEFVQYSADLLLCSDVNEQL
B9HMB4_______________LALAEALLFLMEKAYWEWKVSYCKLLEEVRNECDL-----GLSGSVSIRRFLYDAYSRCVEGSIFDGLKMDMVTFATDLLASNSADEQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain