SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene72030

Length: 282 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene72030
CGTCGTGACCTTGGCTGTCACTCAGCTTCCGAACTATGAACAGAAGATAAAAACTTTCTTTGAGGAGCACTTGCACATGGATGAGGAGATCCGTTATTGCTTAGATGGCACTGGGAAATGTATGTGAATCGGTTTATAAAGCAGCAATGCTGATTATATTTTGCTGGGGATACAGATCATTCTCTCTTTTTTATGTACGAATATTGTAGGAATAAGCTGGTTGCATGTGAGTAGTATTATACCATTCAGAAATGAGGTGGCAGTTTAATCTGTGTGTGCTGT

Ace file of the UniGene sp_v2.0_unigene72030

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase [Bos taurus] sp\|Q3ZBL1.1\|MTND_BOVIN RecName: Full=1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; AltName: Full=Acireductone dioxygenase (Ni(2+)-requiring); Short=ARD; Short=Ni-ARD gb\|AAI03236.1\|	-	-	3.0e-09	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	dihydroxy-3-keto-5-methylthiopentene dioxygenase	-	-	8.29569e-13	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	L-methionine salvage from methylthioadenosine	GO:0019509	Biological Process	8.29569e-13	88%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	8.29569e-13	88%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	8.29569e-13	88%
Blast2go	protein binding	GO:0005515	Molecular Function	8.29569e-13	88%
Blast2go	cytoplasm	GO:0005737	Cellular Component	8.29569e-13	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	8.29569e-13	88%
Blast2go	nucleus	GO:0005634	Cellular Component	8.29569e-13	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Acireductone dioxygenase ARD family	IPR004313	-	0.0	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NKP1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 21 aas, your sequence is shorter than subject: 42 - 188

Fln protein: VVTLAVTQLPNYEQKIKTFFEEHLHMDEEIRYCLDGTGKCM*

Protein Length: 43

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTCCGAACTATGAACAGAAGATAAAAACTTTCTTTGAGGAGCACTTGCACATGGATGAGGAGATCCGTTATTGCTTAGATGGCACTGGGAAATGTATGTGAATCGGTTTATAAAGCAGCAATGCTGATTATATTTTGCTGGGGATACAGATCATTCTCTCTTTTTTATGTACGAATATTGTAGGAATAAGCTGGTTGCATGTGAGTAGTATTATACCATTCAGAAATGAGGTGGCAGTTTAATCTGTGTGTGCTGT

Fln Alignment:

AllPineV4_rep_c102681___VVTLAVTQLPNYEQKIKTFFEEHLHMDEEIRYCLDGTG
A9NKP1_______________MLTVCPDKLPNYEEKIKNFFEEHLHMDEEIRYCLDGSG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain