SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene71886

Length: 437 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene71886
CGTCGTGACCTTGGCTGTCACTCAAGATCCCATACCCTTCTGTAATATTCAATCCTCCGCTGCCCTTTAATACAATTCTCAGCTGTTATTTCTTTGTGGGTTTAATTCCAACCTGCGTTTTTGAAGGCAAATCGAATTGTTGTGTGCCATTTGGAGGCCATCTGGGATTTATTCGGATTGTTCTTAGAACATCGTCTTGACGTTGGTGTGATCATTTTTGGTCGGCAATTGTGCAATGGAGCTCTGAATGGTGCTTTCGCTGGCTTCTTGTTAAACCCAGGCAGAGAACTGCATCGTTTACTTCGCTGGATTTGGAAATTGATACAAATGGCTTTACAATGCACAGTCACCTGCCCTGTCTTGTTCGCTGCTTATGTTGCTGGAGCTTGCAAACTCTCACAGGGCGCTGGAAAGATATTATCATCGTCGTCATTTGC

Ace file of the UniGene sp_v2.0_unigene71886

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	unknown [Picea sitchensis]	-	-	1.74346e-07	85%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S26A, signal peptidase I	IPR000223	-	-
Sma3	Peptidase S24/S26A/S26B/S26C, beta-ribbon domain	IPR011056	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-
Sma3	Peptidase S24/S26A/S26B	IPR019759	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNH9

Fln msg: Distance to subject end: 363 aas, your sequence is shorter than subject: 36 - 400

Fln protein: MALQCTVTCPVLFAAYVAGACKLSQGAGKILSSSSF

Protein Length: 37

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATCCCATACCCTTCTGTAATATTCAATCCTCCGCTGCCCTTTAATACAATTCTCAGCTGTTATTTCTTTGTGGGTTTAATTCCAACCTGCGTTTTTGAAGGCAAATCGAATTGTTGTGTGCCATTTGGAGGCCATCTGGGATTTATTCGGATTGTTCTTAGAACATCGTCTTGACGTTGGTGTGATCATTTTTGGTCGGCAATTGTGCAATGGAGCTCTGAATGGTGCTTTCGCTGGCTTCTTGTTAAACCCAGGCAGAGAACTGCATCGTTTACTTCGCTGGATTTGGAAATTGATACAA_-_ATGGCTTTACAATGCACAGTCACCTGCCCTGTCTTGTTCGCTGCTTATGTTGCTGGAGCTTGCAAACTCTCACAGGGCGCTGGAAAGATATTATCATCGTCGTCATTTGC

Fln Alignment:

AllPineV4_rep_c102385___MALQCTVTCPVLFAAYVAGACKLSQGAGKILSSS
B8LNH9_______________MALQCTVTCPILFAASLAGACGFSQAAGKVLLSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain