SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene71882

Length: 359 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene71882
CGTCGTGACCTTGGCTGTCACTCACTTATCTGATTCATTTCATGGTTTCGACCTTCAGCTTCTGACATAAACCATGATAGATATCTGATGAAATGAAGCCGAGTTCGAAAAGAGATAGAAATAGTTTGCGTGACGGGGGCAGGAGGTTTCATTGCTTCATAGCTTATCAAGTTTCTCCTCACCAAAGGCTATATTGTCAGAGGAGCAGTTCGCACCAACCCAGCTGATGATGGGTTGAAGTATGAGCATTTGAGAGAGTTGGAAGGAGCAAAGGAGAGGCTTGAGCTTGTCAAAGCTGATATTCTTGATTACCAGAGCTTGCTTACAGTTATTTGAGGTTTCCATGGTGTATTTCTGAT

Ace file of the UniGene sp_v2.0_unigene71882

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cinnamoyl-CoA reductase n=1 Tax=Codonopsis lanceolata RepID=Q2WFL1_9ASTR	-	-	8.0e-19	65%
FL-Next	tr=Cinnamoyl-CoA reductase; Pinus taeda (Loblolly pine).	-	-	0.0	63%
Blast2go	cinnamoyl reductase	-	-	1.07299e-36	74%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Bacterial transferase hexapeptide repeat	IPR001451	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	eIF4-gamma/eIF5/eIF2-epsilon	IPR003307	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8VZH7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 236 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 80 - 324

Fln protein: SRVRKEIEIVCVTGAGGFIAS*LIKFLLTKGYIVRGAVRTNPADDGLKYEHLRELEGAKERLELVKADILDYQSLLTVI*

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTATCTGATTCATTTCATGGTTTCGACCTTCAGCTTCTGACATAAACCATGATAGATATCTGATGAA_-_ATGAAGCCGAGTTCGAAAAGAGATAGAAATAGTTTGCGTGACGGGGGCAGGAGGTTTCATTGCTTCATAGCTTATCAAGTTTCTCCTCACCAAAGGCTATATTGTCAGAGGAGCAGTTCGCACCAACCCAGCTGATGATGGGTTGAAGTATGAGCATTTGAGAGAGTTGGAAGGAGCAAAGGAGAGGCTTGAGCTTGTCAAAGCTGATATTCTTGATTACCAGAGCTTGCTTACAGTTATTTGAGGTTTCCATGGTGTATTTCTGAT

Fln Alignment:

AllPineV4_rep_c102378___KEIEIVCVTGAGGFIAS*LIKFLLTKGYIVRGAVRTNPADDGLKYEHLRELEGAKERLELVKADILDYQSLLTVI*GFHGVF
Q8VZH7_______________EEGQTVCVTGAGGFIASWLVKLLLERGYTVRGTVR-NPEDQ--KNAHLKQLEGAEERLTLVKADLMDYNSLLNAINGCQGVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain