SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene71880

Length: 417 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene71880
CGTCGTGACCTTGGCTGTCACTCATCCTTTAGGAAGCGGCTGTTGCTTCTTCCACCAGTATACATTCAGTTATTCATTCCCTTTAACATTTGCCTCTCAGAGCTCATCCTCACTGCAACAACTTCTATTGATTTTGAATTTCATTCCGAAAAAAAAGTCGCAGTTTCGAGTTTTCGGAAGCGGCAGCAGCAAACGTACATATCATTTTAAAGATTGTCTCTTTCAACAACATTTGGAGGATCTCCAGTTGCTGCAGTGTCTCCTTTTTGCCTACTTGTGGCAAATATGAACACACTAATGGCGCAGTTTCTGTTCGTCTTTCTTAGTGGAGCTGTTTTTGCACGCATGTCACAACCATCACAGCCGATTCGATGTGCTAAGAAAGCGATAATCAAGACTGATGATGTTACTGTCAAT

Ace file of the UniGene sp_v2.0_unigene71880

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calmodulin-binding ion transporter-like protein n=1 Tax=Physcomitrella patens RepID=Q6QF41_9BRYO	-	-	1.0e-25	54%
FL-Next	tr=Calmodulin-binding ion transporter-like protein; Physcomitrella patens.	-	-	0.0	54%
Blast2go	protein	-	-	5.56476e-30	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Potassium channel, inwardly rectifying, Kir-like	IPR001838	-	0.0	-
Sma3	Potassium channel, inwardly rectifying, Kir, cytoplasmic	IPR013518	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q6QF41

Fln msg: Distance to subject end: 229 aas, your sequence is shorter than subject: 139 - 428

Fln protein: RRDLGCHSSFRKRLLLLPPVYIQLFIPFNICLSELILTATTSIDFEFHSEKKVAVSSFRKRQQQTYISF*RLSLSTTFGGSPVAAVSPFCLLVANMNTLMAQFLFVFLSGAVFARMSQPSQPIRCAKKAIIKTDDVTVN

Protein Length: 140

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTTTAGGAAGCGGCTGTTGCTTCTTCCACCAGTATACATTCAGTTATTCATTCCCTTTAACATTTGCCTCTCAGAGCTCATCCTCACTGCAACAACTTCTATTGATTTTGAATTTCATTCCGAAAAAAAAGTCGCAGTTTCGAGTTTTCGGAAGCGGCAGCAGCAAACGTACATATCATTTTAAAGATTGTCTCTTTCAACAACATTTGGAGGATCTCCAGTTGCTGCAGTGTCTCCTTTTTGCCTACTTGTGGCAAATATGAACACACTAATGGCGCAGTTTCTGTTCGTCTTTCTTAGTGGAGCTGTTTTTGCACGCATGTCACAACCATCACAGCCGATTCGATGTGCTAAGAAAGCGATAATCAAGACTGATGATGTTACTGTCAAT

Fln Alignment:

AllPineV4_rep_c102370___LLLLPPVYIQLFIPFNICLSELILTATTSIDFEFHSEKKVAVSSFRKRQQQTYISF*RLSLSTTFGGSPVAAVSPFCLLVANMNTLMAQFLFVFLSGAVFARMSQPSQPIRCAKKAIIKTDD
Q6QF41_______________VFLAPVALALLFTPFFVMDMGGLSFDGTTLAETVPGEAKVAAAS-RRFSALLNVFLYALSLSTTFGGSPVVALSPYCLLVANINTLMAQFLFVFLSGGVFARMSQPSHPVRCSKKAIIRSDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain