SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene71823

Length: 274 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene71823
CGTCGTGACCTTGGCTGTCACTCATGGTTTCAGAAACAAGTTCGTGATGCGGAAGTTGTCCTTTATGACCATATATCCAAGGAATTGAATGAATTGAATTTCAAACGTTGCCAACAAATCCCTAAGTGCCCAGGTGCTGATTGGCGAGATCTTCCAGAGGAAAAGGTTAAATTGTCTACTGGGCAAATAGTTGATCTCGTTCCTTGGTGCTTGCCCTACACTGCTGATTGGCATAATCAGTGGAAAGGTCTGTTTGGAAGACTAGACTGGGAAG

Ace file of the UniGene sp_v2.0_unigene71823

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytosine-specific methyltransferase n=1 Tax=Selaginella moellendorffii RepID=D8RTV8_SELML	-	-	1.0e-34	77%
FL-Next	Isoform 3 of DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica GN=MET1B	-	-	0.0	72%
Blast2go	dna methyltransferase	-	-	4.87652e-43	85%

Source	InterPros	Term	Type	Identity
Sma3	Bromo adjacent homology (BAH) domain	IPR001025	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	DNA (cytosine-5)-methyltransferase 1, eukaryote	IPR017198	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: B1Q3J6-3

Fln msg: Distance to subject end: 81 aas, your sequence is shorter than subject: 91 - 1486

Fln protein: RRDLGCHSWFQKQVRDAEVVLYDHISKELNELNFKRCQQIPKCPGADWRDLPEEKVKLSTGQIVDLVPWCLPYTADWHNQWKGLFGRLDWE

Protein Length: 92

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTTCAGAAACAAGTTCGTGATGCGGAAGTTGTCCTTTATGACCATATATCCAAGGAATTGAATGAATTGAATTTCAAACGTTGCCAACAAATCCCTAAGTGCCCAGGTGCTGATTGGCGAGATCTTCCAGAGGAAAAGGTTAAATTGTCTACTGGGCAAATAGTTGATCTCGTTCCTTGGTGCTTGCCCTACACTGCTGATTGGCATAATCAGTGGAAAGGTCTGTTTGGAAGACTAGACTGGGAAG

Fln Alignment:

AllPineV4_rep_c102254___SWFQKQVRDAEVVLYDHISKELNELNFKRCQQIPKCPGADWRDLPEEKVKLSTGQIVDLVPWCLPYTADWHNQWKGLFGRLDWE
B1Q3J6-3_____________SWFQKKIRGNTIALNDHISKEMNELNLIRCQRIPKRPGCDWHDLPDEKVKLSSGQLVDLIPWCLPNTAKRHNQWKGLYGRLDWE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain