SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene71822

Length: 413 nt

UniGene Fasta

>sp_v2.0_unigene71822
CGTCGTGACCTTGGCTGTCACTCATGGTTGCCCAAGAGGAATACTCTTTGTGGCTGATTGCAGCCTCCATTTGGTGGAAATGGTACACACGAAGAGATTAAATGTGCAGAAACTACTTCTGGGAAGGACAGCAAGGAGAGTCTCATATCGTTGTGATTGGCTGTCTTTGCTTGTAATGCAGTCAGGGTGTTATGAGGATAATTCTAGTCCTGTTTCGGAGATTTGCTGTGTTGATCCTCTTAGTGGTTCACTCTTTTCAACATTTACGCTTGATCCAGGTGAAACTGCAAAATGCATGCGGCTATGGAGGTTGGGAGTGAACAAGTTCTAGTAGTTGGAACAGGGCTCTCTTCAGGCCGTGCCATCATGCCTAGTGGTGAAGCTGAAAGTTCCAAAGGCCGTCTTCTAATATT

Ace file of the UniGene sp_v2.0_unigene71822

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Spliceosomal protein sap, putative n=1 Tax=Ricinus communis RepID=B9T017_RICCO	-	-	2.0e-33	57%
FL-Next	tr=Spliceosomal protein sap, putative; Ricinus communis (Castor bean).	-	-	0.0	57%
Blast2go	cleavage and polyadenylation specificity factor a subunit protein	-	-	3.14472e-33	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cleavage/polyadenylation specificity factor, A subunit, C-terminal	IPR004871	-	0.0	-
Sma3	Zinc finger, C2H2	IPR007087	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9T017

Fln msg: Overlapping hits, possible frame ERROR between 325 and 304, Distance to subject end: 313 aas, your sequence is shorter than subject: 137 - 1220

Fln protein: VVTLAVTHGCPRGILFVADCSLHLVEMVHTKRLNVQKLLLGRTARRVSYRCDWLSLLVMQSGCYEDNSSPVSEICCVDPLSGSLFSTFTLDPGETAKCMRxxxxxxxxxLVVGTGLSSGRAIMPSGEAESSKGRLLI

Protein Length: 138

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGTTGCCCAAGAGGAATACTCTTTGTGGCTGATTGCAGCCTCCATTTGGTGGAAATGGTACACACGAAGAGATTAAATGTGCAGAAACTACTTCTGGGAAGGACAGCAAGGAGAGTCTCATATCGTTGTGATTGGCTGTCTTTGCTTGTAATGCAGTCAGGGTGTTATGAGGATAATTCTAGTCCTGTTTCGGAGATTTGCTGTGTTGATCCTCTTAGTGGTTCACTCTTTTCAACATTTACGCTTGATCCAGGTGAAACTGCAAAATGCATGCGGxxxxxxxxxxxxxxxxxxxxxxxxxxxCTAGTAGTTGGAACAGGGCTCTCTTCAGGCCGTGCCATCATGCCTAGTGGTGAAGCTGAAAGTTCCAAAGGCCGTCTTCTAATATT

Fln Alignment:

AllPineV4_rep_c102251___CPRGILFVADCSLHLVEMVHTKRLNVQKLLLGRTARRVSYRCDWLSLLVMQSGCYEDNSSPVSEICCVDPLSGSLFSTFTLDPGETAKCMRLxxxxxxxVLVVGTGLSSGRAIMPSGEAESSKGRLLI
B9T017_______________CPKGLLFVAENSLHLVEMVHSKRLNVQKFHLGGTPRKVLYHSESRLLLVMRTELSNDTCS--SDICCVDPLSGSVVSSFKLEHGETGKSMELxxxxxxxVLVVGTSLSSGPAIMPSGEAESTKGRLIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain