SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene71520

Length: 512 nt

UniGene Fasta

>sp_v2.0_unigene71520
CGTCGTGACCTTGGCTGTCACTCAGTTCTGGAAGATACTCAAAAGGAACTGCATACAACAAGAGGTTTTCTTCAAGCGGATAGGAAGAGAGCATTTCAACTTCAGGTGGAAGTTTTCCAGCTCAGGCAAAAATTACAGTCAGCAGAGTGTCGAGCATCCACTCCCAAGAGATCTCGTGACGTTGGCTGTCAGTATGGTTTGAATATAAATATTGATGTGATCTTTCTGTTGTGACTAATTATATGAATTGCATTATCCTCTGACAATTATTAGTTGCAAACGAAAGTTGTAAAATCTGTGGAGCCCAACCTTGGCACCTGGTCCATCTATCCAAAATTCAGCACACACTGTCTTTAAGTTTGCTCTTTGCCCCTCTGCCTGTTGTTCATTGTTGACTGATAATAGATATATTTGCTCATATTTGGATGAACAATAAAAGTTCTGCAATAATCACTATTGGATTGTATCAATTATCTGGTGTCTTCCTGGCTTTGGACCACCTGGGTCCTGAA

Ace file of the UniGene sp_v2.0_unigene71520

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=RanGAP1 interacting protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Blast2go	kelch repeat-containing protein	-	-	1.79093e-12	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosol	GO:0005829	Cellular Component	1.79093e-12	82%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3		IPR015706	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: Q8L869

Fln msg: your sequence is shorter than subject: 78 - 708

Fln protein: RRDLGCHSVLEDTQKELHTTRGFLQADRKRAFQLQVEVFQLRQKLQSAECRASTPKRSRDVGCQYGLNINIDVIFLL*

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTCTGGAAGATACTCAAAAGGAACTGCATACAACAAGAGGTTTTCTTCAAGCGGATAGGAAGAGAGCATTTCAACTTCAGGTGGAAGTTTTCCAGCTCAGGCAAAAATTACAGTCAGCAGAGTGTCGAGCATCCACTCCCAAGAGATCTCGTGACGTTGGCTGTCAGTATGGTTTGAATATAAATATTGATGTGATCTTTCTGTTGTGA___CTAATTATATGAATTGCATTATCCTCTGACAATTATTAGTTGCAAACGAAAGTTGTAAAATCTGTGGAGCCCAACCTTGGCACCTGGTCCATCTATCCAAAATTCAGCACACACTGTCTTTAAGTTTGCTCTTTGCCCCTCTGCCTGTTGTTCATTGTTGACTGATAATAGATATATTTGCTCATATTTGGATGAACAATAAAAGTTCTGCAATAATCACTATTGGATTGTATCAATTATCTGGTGTCTTCCTGGCTTTGGACCACCTGGGTCCTGAA

Fln Alignment:

AllPineV4_rep_c101652___SVLEDTQKELHTTRGFLQADRKRAFQLQVEVFQLRQKLQSAECRASTPKR
Q8L869_______________AVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRAATPRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain