SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene71421

Length: 323 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene71421
CGTCGTGACCTTGGCTGTCACTCAAAAGATTCTACGATCTTCTCAGCCGCCTCCCTCGCCCAACTAAACTCTCGTCTATCTGGAGTATTCTCTCGGTAATGGCTTCTCCTGCAACAACATCAGCCTTTTCAACATCCCATCTCCTCAAACATAAGGCCACAGCTGCATGGAAGAACAAGAAGAGGATGAAGACATTCGTAGGAGCAGTAATGGCTCCGCCCCAGCCGCAGCAGCGTTCCCCTGCTTCAACGGGCTCTGTGAAACACGCCATGACCATGACAGAAAAGATACTAGCCAGGGCCGCAGAGAGATCTCAAGTGAAT

Ace file of the UniGene sp_v2.0_unigene71421

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	unknown [Picea sitchensis]	-	-	2.42135e-19	89%

Source	InterPros	Term	Type	Identity
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha	IPR001030	-	-
Sma3	Homoaconitase/3-isopropylmalate dehydratase, large subunit	IPR006251	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	IPR015931	-	-
Sma3	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2	IPR015932	-	-
Sma3	Homoaconitase/3-isopropylmalate dehydratase, small/large subunit	IPR015936	-	-
Sma3	Aconitase/isopropylmalate dehydratase	IPR015937	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ24

Fln msg: Distance to subject end: 424 aas, your sequence is shorter than subject: 75 - 516

Fln protein: MASPATTSAFSTSHLLKHKATAAWKNKKRMKTFVGAVMAPPQPQQRSPASTGSVKHAMTMTEKILARAAERSQVN

Protein Length: 76

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAGATTCTACGATCTTCTCAGCCGCCTCCCTCGCCCAACTAAACTCTCGTCTATCTGGAGTATTCTCTCGGTA_-_ATGGCTTCTCCTGCAACAACATCAGCCTTTTCAACATCCCATCTCCTCAAACATAAGGCCACAGCTGCATGGAAGAACAAGAAGAGGATGAAGACATTCGTAGGAGCAGTAATGGCTCCGCCCCAGCCGCAGCAGCGTTCCCCTGCTTCAACGGGCTCTGTGAAACACGCCATGACCATGACAGAAAAGATACTAGCCAGGGCCGCAGAGAGATCTCAAGTGAAT

Fln Alignment:

AllPineV4_rep_c101482___LKHKATAAWKNKKRMKTFVGAVMAXXXXXXRSPASTGSVKHAMTMTEKILARAAERSQVN
B8LQ24_______________LNSKATAAWKNKKRTAKFVAAVMAPPQPQQRSPASTGSVKHAMTMTEKILARAAERSQVS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain