SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene71330

Length: 229 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene71330
CGTCGTGACCTTGGCTGTCACTCAATGTTAAGGCTGGCTATGAAGGGAAGACTATTAAACTTCGAATTCCCTTTCCTAGACCTGCTGAGGATCGAAGGGATGTGAAGACCCTCATAGTGCAGATGCTTGAAGCTGCAAAACAGATTCCATCGATTAAAATTCTTAAATACAACTCAAGTATATATATGTCATATTTGCATGTAATTGTTTGTTGTCATAATTGAACACA

Ace file of the UniGene sp_v2.0_unigene71330

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Root border cell-specific protein n=1 Tax=Pisum sativum RepID=Q9M7D2_PEA	-	-	4.0e-11	76%
FL-Next	tr=FMN binding protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	69%
Blast2go	root border cell-specific protein	-	-	1.17473e-13	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	1.17473e-13	85%

Source	InterPros	Term	Type	Identity
Sma3	Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain	IPR011576	-	-
Sma3	FMN-binding split barrel	IPR012349	-	-
Sma3	Haem iron utilisation protein, pyridoxamine 5'-phosphate domain-type	IPR014599	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7L1B3

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 74 - 323

Fln protein: S*PWLSLNVKAGYEGKTIKLRIPFPRPAEDRRDVKTLIVQMLEAAKQIPSIKILKYNSSIYMSYLHVIVCCHN*

Protein Length: 75

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTAAGGCTGGCTATGAAGGGAAGACTATTAAACTTCGAATTCCCTTTCCTAGACCTGCTGAGGATCGAAGGGATGTGAAGACCCTCATAGTGCAGATGCTTGAAGCTGCAAAACAGATTCCATCGATTAAAATTCTTAAATACAACTCAAGTATATATATGTCATATTTGCATGTAATTGTTTGTTGTCATAATTGA___ACACA

Fln Alignment:

AllPineV4_rep_c101288___LSLNVKAGYEGKTIKLRIPFPRPAEDRRDVKTLIVQMLEAAKQIPS
D7L1B3_______________LGFNVKASLQGNTFKLRVPFPRPAQDRKDVKTLIVEMLQAAKPIPN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain