SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene70428

Length: 379 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene70428
CGTCTGACCTTGGCTGTCACTCATCTAGATGAGGTTACAGACAAGAGGAAGAACTGGAAGGTGAAGATCACTGATTCGAGTCAGTGTAGGTCTCTCAGGTTGCTGACACAATGCATGCAAGCAAGGTAGTAAGACTGATATACATCAATTTCGGTGTTGCTGTTTTAGCACAGGCATCCAATGCTCTCCATAAGCTATGGAAATGGCAGCGGAGTGACTGGAATCCATCTGGAAAGACAGTATTCCACCACAGATGTGGCAGCCAGCTAGTGGGATTACCATGAATAATGACTGGTGATACAAATCCAGAAGAAGCCGCTGCTTGTATAGCTTTGTCTAAGAATGATTCCTATTTGATGTCTACTTCCGGTGGCTTCGC

Ace file of the UniGene sp_v2.0_unigene70428 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-40 repeat protein-like (Fragment) n=1 Tax=Populus suaveolens RepID=Q1HIU4_9ROSI	-	-	2.0e-22	56%
FL-Next	sp=Topless-related protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	53%
Blast2go	ramosa 1 enhancer locus 2	-	-	7.82695e-24	67%

Source	InterPros	Term	Type	Identity
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WV90

Fln msg: Overlapping hits, possible frame ERROR between 102 and 96, Distance to subject end: 273 aas, your sequence is shorter than subject: 126 - 1120

Fln protein: RLTLAVTHLDEVTDKRKNWKVKITDSSQCRSxxxxDTMHASKVVRLIYINFGVAVLAQASNALHKLWKWQRSDWNPSGKTVFHHRCGSQLVGLP*IMTGDTNPEEAAACIALSKNDSYLMSTSGGF

Protein Length: 127

Fln nts: CGTCTGACCTTGGCTGTCACTCATCTAGATGAGGTTACAGACAAGAGGAAGAACTGGAAGGTGAAGATCACTGATTCGAGTCAGTGTAGGTCTxxxxxxxxxxxxGACACAATGCATGCAAGCAAGGTAGTAAGACTGATATACATCAATTTCGGTGTTGCTGTTTTAGCACAGGCATCCAATGCTCTCCATAAGCTATGGAAATGGCAGCGGAGTGACTGGAATCCATCTGGAAAGACAGTATTCCACCACAGATGTGGCAGCCAGCTAGTGGGATTACCATGAATAATGACTGGTGATACAAATCCAGAAGAAGCCGCTGCTTGTATAGCTTTGTCTAAGAATGATTCCTATTTGATGTCTACTTCCGGTGGCTTCGC

Fln Alignment:

AllPineV4_rep_c99386___DEVTDKRKNWKV-KITDSSQCRSLxxADTMHASKVVRLIYINFGVAVLAQASNALHKLWKWQRSDWNPSGKTVFHHRCGSQLVGLP*IMTGD---TNPEEAAACIALSKNDSYLMSTSGG
Q0WV90_______________EESNDKSKVWKLTEVGEPSQCRSLxxPENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain