SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene70384

Length: 501 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene70384
ATGGGATAGATGCAAACTGTTTTGCTCTGGGATCTGCTCGTATTTCTGTATTTTGTGTCAAGTGGGGAAGTTTTCTTTAATATGCGGCTAAGGCCTGACTTTTAGGGCTTTGTTACTGGCGAGAGTTCAGATTTGCAGCCTCTTTCGACATGGTTTAACTTTAGGGCTTCTTTCAATCCTCTATAGGTGGCTAAGGTCTTCATTACCTTTATATCGTTTTCAAGATGCAGATCTTTGTTAAAACTCTCTCTGGTAAGACGATCACCCTCGAGGTTGAAAGCTCTGACACTATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGTAGCGTCTGATCTTTGCAGGAAAGCAGCTAGAAGATGGCCGAACACTGGCCGACTACAATATTCAGAAGGAATCTACCCTGCACCTCGTGCTTCGTCTTAGAGGTGGCATGCAGATCTTTGTCAAAACCCTAACTAAGGTAAAAAGAAAACGAAATT

Ace file of the UniGene sp_v2.0_unigene70384

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin [Medicago truncatula]	-	-	3.0e-39	94%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	97%
Blast2go	ubiquitin-like protein	-	-	0.0	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	97%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 92 - 229

Fln protein: MQIFVKTLSGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ*RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTKVKRKRN

Protein Length: 93

Fln nts: ATGGGATAGATGCAAACTGTTTTGCTCTGGGATCTGCTCGTATTTCTGTATTTTGTGTCAAGTGGGGAAGTTTTCTTTAATATGCGGCTAAGGCCTGACTTTTAGGGCTTTGTTACTGGCGAGAGTTCAGATTTGCAGCCTCTTTCGACATGGTTTAACTTTAGGGCTTCTTTCAATCCTCTATAGGTGGCTAAGGTCTTCATTACCTTTATATCGTTTTCAAG_-_ATGCAGATCTTTGTTAAAACTCTCTCTGGTAAGACGATCACCCTCGAGGTTGAAAGCTCTGACACTATTGACAATGTAAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGTAGCGTCTGATCTTTGCAGGAAAGCAGCTAGAAGATGGCCGAACACTGGCCGACTACAATATTCAGAAGGAATCTACCCTGCACCTCGTGCTTCGTCTTAGAGGTGGCATGCAGATCTTTGTCAAAACCCTAACTAAGGTAAAAAGAAAACGAAATT

Fln Alignment:

AllPineV4_rep_c99290___MQIFVKTLSGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ*RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT
Q7FPA4_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain