SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene70310

Length: 299 nt

Origin of reads: Biogeco3 v1

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene70310
AATGCATTCATGCTTCAGCAGTTTGAGAATCCTGCTAATGTCAAGACGCATTTTGAGACCACGGGACCTGAGATCTGGGAAGACACTGCAGGCCAAGTTGATATATTCGTGATGGGAATTGGGAGCGGTGGTACTGTGTCGGGAGTTGGTAGATACCTGAAGAGCAAAAATCCCAATGTCAAGATTTATGGAGCGCGAGAGCTAGCTACGAAGGAAGGCCTCATGGTTGGAATTTCTTCTGGTGCCAACACAGTTGCAGCAATTCAATTAGCAAAAAGGCCAGAGAATAAAAACAAACT

Ace file of the UniGene sp_v2.0_unigene70310 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cysteine synthase n=2 Tax=Picea sitchensis RepID=B8LQB8_PICSI	-	-	4.0e-31	53%
FL-Next	sp=Cysteine synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	cysteine synthase	-	-	4.01148e-40	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	4.01148e-40	64%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	4.01148e-40	64%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Glucoamylase	IPR000165	-	-
Sma3	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site	IPR001216	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Pyridoxal phosphate-dependent enzyme, beta subunit	IPR001926	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Cysteine synthase K/M	IPR005856	-	-
Sma3	Cysteine synthase A	IPR005859	-	-
Sma3		IPR017909	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NR69

Fln msg: Distance to subject end: 34 aas, your sequence is shorter than subject: 99 - 307

Fln protein: NAFMLQQFENPANVKTHFETTGPEIWEDTAGQVDIFVMGIGSGGTVSGVGRYLKSKNPNVKIYGARELATKEGLMVGISSGANTVAAIQLAKRPENKNK

Protein Length: 100

Fln nts: AATGCATTCATGCTTCAGCAGTTTGAGAATCCTGCTAATGTCAAGACGCATTTTGAGACCACGGGACCTGAGATCTGGGAAGACACTGCAGGCCAAGTTGATATATTCGTGATGGGAATTGGGAGCGGTGGTACTGTGTCGGGAGTTGGTAGATACCTGAAGAGCAAAAATCCCAATGTCAAGATTTATGGAGCGCGAGAGCTAGCTACGAAGGAAGGCCTCATGGTTGGAATTTCTTCTGGTGCCAACACAGTTGCAGCAATTCAATTAGCAAAAAGGCCAGAGAATAAAAACAAACT

Fln Alignment:

AllPineV4_rep_c99153___NAFMLQQFENPANVKTHFETTGPEIWEDTAGQVDIFVMXXXXXXXXXXXGRYLKSKNPNVKIYG--------------------------------------------------ARELATKEGLMVGISSGANTVAAIQLAKRPENKNK
A9NR69_______________NAFMLQQFDNPANVKAHFETTGPEIWEDTAGQVDIFVMGIGSGGTVSGVGRYLKSKNPNVKIYGLEPAESNILNGGKPGPHQITGTGVGFTPKILDLDILDGVIEVSSDDALKMARELAWKEGLMVGISSGANTVAALQLARRPENKNK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain