SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene70233

Length: 341 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene70233
AATGTGAATCCGTTCTCGCAGGACTTTTAACCCTGCCGGAGCACCCCGGGTTTCGGTTTTGAAAGGAGCGGCCGTTGGACGCAACAAGTGCTTGATCATCATTGGTTACTTACCTTTGTACTGACAAGGAGACTGAAGAAATGCTTGCCTGCAAGTCTATTTCCAAGCGGAAGCTCAGAACTGCGATAGATATCGAGGATGTGAGGCGAGAAGTAGCTATAATGAACAATTTGCCTCAGCATCCGAACATTGTTACCTTGAAAGCTACGTACGAGGACGACCACGCTGTGCATCTCGTCATGGAGCTCTGCGAGGGTGGAGAGCTATTTGACAGGATCGTT

Ace file of the UniGene sp_v2.0_unigene70233

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium-dependent protein kinase, putative n=1 Tax=Ricinus communis RepID=B9R931_RICCO	-	-	4.0e-32	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	calcium-dependent protein kinase	-	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	92%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	calcium-dependent protein kinase C activity	GO:0004698	Molecular Function	92%
Blast2go	cytoplasm	GO:0005737	Cellular Component	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Parvalbumin	IPR008080	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ38

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 386 aas, your sequence is shorter than subject: 113 - 529

Fln protein: CESVLAGLLTLPEHPGFRF*KERPLDATSA*SSLVTYLCTDKETEEMLACKSISKRKLRTAIDIEDVRREVAIMNNLPQHPNIVTLKATYEDDHAVHLVMELCEGGELFDRIV

Protein Length: 114

Fln nts: AATGTGAATCCGTTCTCGCAGGACTTTTAACCCTGCCGGAGCACCCCGGGTTTCGGTTTTGAAAGGAGCGGCCGTTGGACGCAACAAGTGCTTGATCATCATTGGTTACTTACCTTTGTACTGACAAGGAGACTGAAGAAATGCTTGCCTGCAAGTCTATTTCCAAGCGGAAGCTCAGAACTGCGATAGATATCGAGGATGTGAGGCGAGAAGTAGCTATAATGAACAATTTGCCTCAGCATCCGAACATTGTTACCTTGAAAGCTACGTACGAGGACGACCACGCTGTGCATCTCGTCATGGAGCTCTGCGAGGGTGGAGAGCTATTTGACAGGATCGTT

Fln Alignment:

AllPineV4_rep_c98989___VTYLCTDKETEEMLACKSISKRKLRTAIDIEDVRREVAIMNNLPQHPNIVTLKATYEDDHAVHLVMELCEGGELFDRIV
C0PQ38_______________ITYLCTDRESRELLACKSISKRKLKTAIDIEDVRREVAIMKHLPKNNNIVSLKATCEDDNAVHLLMELCEGGELFDRIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain