SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene70135

Length: 390 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene70135
ATGGGATTGCAATGGACAATGTGTCTGATTTTGCTCTTCATTGATAACCATTCAAATAAATTACTGTAGCTTTATTTTTGGTCCAAATAGAGTCTCTCTCATTAAGGTTTCCCTTCCCCCTCTGTTTTGACAGAAAGATCAAGCAAAGCAATTGACGGTCTTCAGCCTGAAATGACAAGATCTCCTAGTAAAGTGTCCATGATGTTCTCTGGAACTCAAGACAAATGTGCTACCTGTGGAAAAACAGCATACCCTCTTGAGAAGGTCACTGTGGAAAACTTATCCTACCACAAGTCTTGTTTCAGGTGTTCTCATGGGGGGTATTCAATCAGCCCTTCTAATTATGCTGCACTAGAAGGCATACTGTATTGCAAGCATCATTTTCCCAGC

Ace file of the UniGene sp_v2.0_unigene70135

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lim domain protein n=2 Tax=Pinaceae RepID=F4MKL9_PINPS	-	-	2.0e-40	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	lim domain-containing protein	-	-	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	BRCT domain	IPR001357	-	-
Sma3	Zinc finger, LIM-type	IPR001781	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA polymerase, family X, beta-like	IPR002008	-	-
Sma3	DNA-directed DNA polymerase X	IPR002054	-	-
Sma3	DNA-directed DNA polymerase, family X, beta-like, N-terminal	IPR010996	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	DNA polymerase lambda, fingers domain	IPR018944	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNB4

Fln msg: Distance to subject end: 33 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 95 - 197

Fln protein: GFPSPSVLTERSSKAIDGLQPEMTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCSHGGYSISPSNYAALEGILYCKHHFPS

Protein Length: 96

Fln nts: ATGGGATTGCAATGGACAATGTGTCTGATTTTGCTCTTCATTGATAACCATTCAAATAAATTACTGTAGCTTTATTTTTGGTCCAAATAGAGTCTCTCTCATTAAGGTTTCCCTTCCCCCTCTGTTTTGACAGAAAGATCAAGCAAAGCAATTGACGGTCTTCAGCCTGAAATGACAAGATCTCCTAGTAAAGTGTCCATGATGTTCTCTGGAACTCAAGACAAATGTGCTACCTGTGGAAAAACAGCATACCCTCTTGAGAAGGTCACTGTGGAAAACTTATCCTACCACAAGTCTTGTTTCAGGTGTTCTCATGGGGGGTaTTCAATCAGCCCTTCTAATTATGCTGCACTAGAAGGCATACTGTATTGCAAGCATCATTTTCCCAGC

Fln Alignment:

AllPineV4_rep_c98783___TERSSKAIDGLQPEMTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVENLSYHKSCFRCSHGGYSISPSNYAALEGILYCKHHF
A9NNB4_______________SQRSSKVIDGLSPELTRSPSKVSMMFSGTQDKCATCGKTAYPLEKVTVESLSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain