SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene70099

Length: 198 nt

UniGene Fasta

>sp_v2.0_unigene70099
AATGTCTCTAGTGGCTGTGAAGCTTCTAGATAGGCATAGGCACAGCGAGGCCCAATTCATGAATGAAGTGGCCACCATAGGACATGTTCATCATGTCAATTTGGTTCGTCTCTTGGGGTTTTGCTTTGAAAGCTTTACCAGCGCGCTTCTATATGAATACATGCCTAATAAATCTCTGGATAACTTTATATTTGCCGG

Ace file of the UniGene sp_v2.0_unigene70099

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like kinase (Fragment) n=1 Tax=Hordeum vulgare RepID=Q9SWU6_HORVU	-	-	2.0e-14	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	probable receptor-like protein kinase at1g67000-like	-	-	3.80718e-18	79%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: Distance to subject end: 230 aas, your sequence is shorter than subject: 65 - 431

Fln protein: MSLVAVKLLDRHRHSEAQFMNEVATIGHVHHVNLVRLLGFCFESFTSALLYEYMPNKSLDNFIFA

Protein Length: 66

Fln nts: AATGTCTCTAGTGGCTGTGAAGCTTCTAGATAGGCATAGGCACAGCGAGGCCCAATTCATGAATGAAGTGGCCACCATAGGACATGTTCATCATGTCAATTTGGTTCGTCTCTTGGGGTTTTGCTTTGAAAGCTTTACCAGCGCGCTTCTATATGAATACATGCCTAATAAATCTCTGGATAACTTTATATTTGCCGG

Fln Alignment:

AllPineV4_rep_c98711___SLVAVK-LLDRHRHSEAQFMNEVATIGHVHHVNLVRLLGFCFESFTSALLYEYMPNKSLDNFIF
A9NM60_______________TLVAVKCLVNESRQGQAEFCAEIGTTSSINHSNLVRLHGICVEGQHRILVYEFMANGSLDRWLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain