SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene70097

Length: 421 nt

UniGene Fasta

>sp_v2.0_unigene70097
TATTGGTCCTATTCCACTTGAGTGGAGTAATTCCATCTATGCTTGGAAGTTGTGTTGAACTATTTCATTGAATTTGTCTCAAAATTCCTTCCAAGGTTCTATTCCAAATTCACTTGAAAATTGAAAAAGTATTACTAGCCTAGACCTCTCTTCCAAATCCTTATCAAGTACCATACCACGTGCTCTCAACAAGTTGAAGATGCTTCAATATTTGGATTTGTCTTTCAACAAGCTCATTGGGGAAATTCCAAAAGGAGGGATTTTTTGCAAATCAATAAATTGTCATTTCCTTAAAAGGAAATCCCGACCTTGGTGGACTACAAGAATTCCAATTATCTTCATGTCCAACCCTAAGAGATCCTTCTACAATTGTGAAAAGAGTACTATTGCTAGTGAGGGGATTATTGCTTTTATACTATGT

Ace file of the UniGene sp_v2.0_unigene70097

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Somatic embryogenesis receptor-like kinase 1; Pinus massoniana.	-	-	0.0	41%
Blast2go	probable lrr receptor-like serine threonine-protein kinase at3g47570-like	-	-	3.24726e-07	66%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5FY57

Fln msg: Distance to subject end: 392 aas, your sequence is shorter than subject: 140 - 626

Fln protein: IGPIPLEWSNSIYAWKLC*TISLNLSQNSFQGSIPNSLEN*KSITSLDLSSKSLSSTIPRALNKLKMLQYLDLSFNKLIGEIPKGGIFCKSINCHFLKRKSRPWWTTRIPIIFMSNPKRSFYNCEKSTIASEGIIAFILC

Protein Length: 141

Fln nts: TATTGGTCCTATTCCACTTGAGTGGAGTAATTCCATCTATGCTTGGAAGTTGTGTTGAACTATTTCATTGAATTTGTCTCAAAATTCCTTCCAAGGTTCTATTCCAAATTCACTTGAAAATTGAAAAAGTATTACTAGCCTAGACCTCTCTTCCAAATCCTTATCAAGTACCATACCACGTGCTCTCAACAAGTTGAAGATGCTTCAATATTTGGATTTGTCTTTCAACAAGCTCATTGGGGAAATTCCAAAAGGAGGGATTTTTTGCAAATCAATAAATTGTCATTTCCTTAAAAGGAAATCCCGACCTTGGTGGACTACAAGAATTCCAATTATCTTCATGTCCAACCCTAAGAGATCCTTCTACAATTGTGAAAAGAGTACTATTGCTAGTGAGGGGATTATTGCTTTTATACTATGT

Fln Alignment:

AllPineV4_rep_c98708___GPIPLEWSNSIYAWKLC*TISLNLSQNSFQGSIPNSLENXXXXXXXXXXXXXXXXXXPRALNKLKMLQYLDLSFNKLIGEIPKGGIF
D5FY57_______________GPIPSDLGN------LTNLVSLDLYLNNFTGLIPESLGKLSRLRFLRLNNNSLVGRIPMSLTTITALQVLDLSNNNLTGEVPANGSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain