SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene70037

Length: 418 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene70037
GTAGTTTGGGAAGAGTCAAAGGCAAGGGAAGAAGAGGTGTGCCCATCTGCCCCTGCCTCTCCCTCTCCCTCACCATATACGATAGCCATGCCTACCTCTTCTGTAAACTCAATCCCGAAGCTGTATACCTTGTCGGAGGTCTCTCAGCACAACAGTGGGAAGGATTGCTGGCTTATCATCGATGGCAAGGTATTGTGCTAATGGTCATGGTCATTGATCCGGACTTATGCAGGAATGCAACAAAACACAGGTATATGATGTGACCAATTACTTGGAGGAGCATCCAGGAGGAGATGAAGTGTTGCTTTTAGCAACTGGCAAAGACGCAACGGATGATTTTGAAGATGCCGGACATAGTAACACTGCAAGGGAAACTATGGAAGAATATTACATTGGAGATTTCGATCCCTCTTCGATC

Ace file of the UniGene sp_v2.0_unigene70037

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome b5 (Fragment) n=1 Tax=Olea europaea RepID=O24651_OLEEU	-	-	7.0e-27	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	cytochrome b5	-	-	1.51157e-36	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	1.51157e-36	88%
Blast2go	protein binding	GO:0005515	Molecular Function	1.51157e-36	88%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	1.51157e-36	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome b5	IPR001199	-	0.0	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPV9

Fln msg: Separated hits, possible frame ERROR between 192 and 248, Distance to subject end: 46 aas, your sequence is shorter than subject: 111 - 136

Fln protein: MPTSSVNSIPKLYTLSEVSQHNSGKDCWLIIDGKxxxxxxxxxxxxxxxxxxxxQVYDVTNYLEEHPGGDEVLLLATGKDATDDFEDAGHSNTARETMEEYYIGDFDPSSI

Protein Length: 112

Fln nts: GTAGTTTGGGAAGAGTCAAAGGCAAGGGAAGAAGAGGTGTGCCCATCTGCCCCTGCCTCTCCCTCTCCCTCACCATATACGATAGCC_-_ATGCCTACCTCTTCTGTAAACTCAATCCCGAAGCTGTATACCTTGTCGGAGGTCTCTCAGCACAACAGTGGGAAGGATTGCTGGCTTATCATCGATGGCAAGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACAGGTATATGATGTGACCAATTACTTGGAGGAGCATCCAGGAGGAGATGAAGTGTTGCTTTTAGCAACTGGCAAAGACGCAACGGATGATTTTGAAGATGCCGGACATAGTAACACTGCAAGGGAAACTATGGAAGAATATTACATTGGAGATTTCGATCCCTCTTCGATC

Fln Alignment:

AllPineV4_rep_c98564___MPTSSVNSIPKLYTLSEVSQHNSGKDCWLIIDGKVxxxxxxxxxxxxxxxxxxxQVYDVTNYLEEHPGGDEVLLLATGKDATDDFEDAGHSNTARETMEEYYIGDFDPSS
A9NPV9_______________MPTSSVNPIPKMYTLLEVSQHNNDKDCWLIINGKVxxxxxxxxxxxxxxxxxxxKVYDVTNYLEEHPGGDEVLLSATGKDATDDFEDAGHSNSARETMEEYYIGDIDPSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain