SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69954

Length: 305 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene69954
GTAACAGGCTTTTGCATGGGTGGTGCTTTATCTATTGCAAGTGCTGTGTTGGTTCCAGAAGTTGATAGCGTTGTTGCATTCTATGTGTTCCTCTACACAACTTGCAGATCCATCATCAGCAAAAGCACCTGTGCAGGCTCATTTTGGAGAACTTGATAACTTTGTTGGGTTTTCAGATGTGACTGTATGATTCTCTTTACCTCTTATAGGGTACATGTGTGTAGTGATCAATGTATTATTTTCAAGGAAGGATAGTTTTTAAATAATTCCTCAGATTTATAAAAATTTGATGTTCGTAGAAAAAA

Ace file of the UniGene sp_v2.0_unigene69954 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	carboxymethylenebutenolidase [Arabidopsis thaliana] gb\|AAC25934.1\| putative carboxymethylenebutenolidase [Arabidopsis thaliana] gb\|AAP21224.1\| At2g32520 [Arabidopsis thaliana] dbj\|BAE99670.1\| putative carboxymethylenebutenolidase [Arabidopsis thaliana] gb	-	-	5.0e-17	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	protein usf	-	-	5.10397e-19	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thiolase	IPR002155	-	0.0	-
Sma3	Dienelactone hydrolase	IPR002925	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLE7

Fln msg: Separated hits, possible frame ERROR between 84 and 92, Unexpected STOP codon at 3' end. Distance to subject end: 29 aas, your sequence is shorter than subject: 64 - 243

Fln protein: VTGFCMGGALSIASAVLVPEVDSVVAFxxxxSTQLADPSSAKAPVQAHFGELDNFVGFSDVTV*

Protein Length: 65

Fln nts: GTAACAGGCTTTTGCATGGGTGGTGCTTTATCTATTGCAAGTGCTGTGTTGGTTCCAGAAGTTGATAGCGTTGTTGCATTCTAxxxxxxxxxCTCTACACAACTTGCAGATCCATCATCAGCAAAAGCACCTGTGCAGGCTCATTTTGGAGAACTTGATAACTTTGTTGGGTTTTCAGATGTGACTGTATGATTCTCTTTACCTCTTATAGGGTACATGTGTGTAGTGATCAATGTATTATTTTCAAGGAAGGATAGTTTTTAAATAATTCCTCAGATTTATAAAAATTTGATGTTCGTAGAAAAAA

Fln Alignment:

AllPineV4_rep_c98373___VTGFCMGGALSIASAVLVPEVDSVVAFYxxxSTQLADPSSAKAPVQAHFGELDNFVGFSDVTV*FSL
A9NLE7_______________VTGFCMGGALSIASAVLVPGVDSVVAFYxxxSPQLADPSSAKAPVQAHFGELDNFVGFSDVTAAKSL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain