SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69910

Length: 392 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene69910
CGTCGTGACCTTGGCTGTCACTCAGGTTTGTGCTGGCGTGTGCAGAACGTGGAGGGAAATTATCAAGGAGATTGTGAAACCGCCGCTTCTGTCCGGAGTTTTGGCATTTCCTGTGTCCTTGAAGCAGCCTGGACCGAAAGATTCTGCTGTGCAATGTTTTATCAAGCAAGATAGGACTGCATCTGCATATTATTTGTACTTGGGTTTGGCTTCAAGATTTGAGTCGAAGTCTGAAATGAATGAAGGGTTTGTGGAAGATTACCCTTATCTTATCCCTTGTTGAATATTTGTTGATGGATTTGTTGTGCAAAAGGAAGGTTTGACTTGGCGTCTAGGAGGTTGATAATGGGTCTTGAATATCTCACTTAGATTTGATTCTATAAGAAGAGTAA

Ace file of the UniGene sp_v2.0_unigene69910

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TLP domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJD8_MALDO	-	-	7.0e-18	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	tubby-like f-box protein 3	-	-	1.30187e-30	80%

Source	InterPros	Term	Type	Identity
Sma3	Tubby, C-terminal	IPR000007	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Tubby, C-terminal, conserved site	IPR018066	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LK95

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 205 aas, your sequence is shorter than subject: 94 - 418

Fln protein: VVTLAVTQVCAGVCRTWREIIKEIVKPPLLSGVLAFPVSLKQPGPKDSAVQCFIKQDRTASAYYLYLGLASRFESKSEMNEGFVEDYPYLIPC*

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTGTGCTGGCGTGTGCAGAACGTGGAGGGAAATTATCAAGGAGATTGTGAAACCGCCGCTTCTGTCCGGAGTTTTGGCATTTCCTGTGTCCTTGAAGCAGCCTGGACCGAAAGATTCTGCTGTGCAATGTTTTATCAAGCAAGATAGGACTGCATCTGCATATTATTTGTACTTGGGTTTGGCTTCAAGATTTGAGTCGAAGTCTGAAATGAATGAAGGGTTTGTGGAAGATTACCCTTATCTTATCCCTTGTTGAATATTTGTTGATGGATTTGTTGTGCAAAAGGAAGGTTTGACTTGGCGTCTAGGAGGTTGATAATGGGTCTTGAATATCTCACTTAGATTTGATTCTATAAGAAGAGTAA

Fln Alignment:

AllPineV4_rep_c98250___CAGVCRTWREIIKEIVKPPLLSGVLAFPVSLKQPGPKDSAVQCFIKQDRTASAYYLYLGLAS
B8LK95_______________CASVCRTWREIIKEIVKPPLLSGVLTFPVSLKQPGPKDLPVQCFIKQDRTASAYYLYLGLTS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain