SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69886

Length: 479 nt

UniGene Fasta

>sp_v2.0_unigene69886
GATCGAGTCTCGTTAGCTTCGTTAGCTTCCTTTTCTTATAATCGCTTCTATTTTGGCTCTGAGCAATTTGGGAACATGGCAGATAACCAGCGAGTGCACCCCACGACAGTAGATTTAGAGAAAAACGCAGGCGAATATGAAAACCAAAAGCCGAGCGCTCCCTTGATACCCAAGTCTAGTCTTTCGTCTGAAAAGAGCGAGATTTTTCCCGTGCCCGCTTATCCTCCTTCCGGCGGGCAGCCAACTGATCAGTTTTCAAGAGACCCAGTCATCTCCAGGCGAGAGCTTCCCAAATACTACTCACCGCCTCCCAAGCGCCGGAGCTCCTGTTGCCGCTGCTTGTGCTGCACGATTTGCTTTCTATTCGCGCTCGTCGCGGCCATCGCCATTACCTGTGGCATTCTGTACTTGGTATTCCAGCCGAGAATCCCCAAATACTCCGTCGACAGCATCCAGATCGCCAACTTCAGCATCAACTC

Ace file of the UniGene sp_v2.0_unigene69886

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_39.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7T7D7_VITVI	-	-	1.0e-10	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	late embryogenesis abundant hydroxyproline-rich glycoprotein	-	-	1.26117e-44	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Enolpyruvate transferase domain	IPR001986	-	0.0	-
Sma3		IPR010847	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWB5

Fln msg: Distance to subject end: 138 aas, your sequence is shorter than subject: 134 - 268

Fln protein: MADNQRVHPTTVDLEKNAGEYENQKPSAPLIPKSSLSSEKSEIFPVPAYPPSGGQPTDQFSRDPVISRRELPKYYSPPPKRRSSCCRCLCCTICFLFALVAAIAITCGILYLVFQPRIPKYSVDSIQIANFSIN

Protein Length: 135

Fln nts: GATCGAGTCTCGTTAGCTTCGTTAGCTTCCTTTTCTTATAATCGCTTCTATTTTGGCTCTGAGCAATTTGGGAAC_-_ATGGCAGATAACCAGCGAGTGCACCCCACGACAGTAGATTTAGAGAAAAACGCAGGCGAATATGAAAACCAAAAGCCGAGCGCTCCCTTGATACCCAAGTCTAGTCTTTCGTCTGAAAAGAGCGAGATTTTTCCCGTGCCCGCTTATCCTCCTTCCGGCGGGCAGCCAACTGATCAGTTTTCAAGAGACCCAGTCATCTCCAGGCGAGAGCTTCCCAAATACTACTCACCGCCTCCCAAGCGCCGGAGCTCCTGTTGCCGCTGCTTGTGCTGCACGATTTGCTTTCTATTCGCGCTCGTCGCGGCCATCGCCATTACCTGTGGCATTCTGTACTTGGTATTCCAGCCGAGAATCCCCAAATACTCCGTCGACAGCATCCAGATCGCCAACTTCAGCATCAACTC

Fln Alignment:

AllPineV4_rep_c98213___MADNQRVHPTTVDLEKNAGEYENQKPSAPLIPKSSLSSEKSEIFPVPAYPPSGGQPTDQFSRDPVISRREXXXXXXXXXXXXXXXXXXXXXTICFLFALVAAIAITCGILYLVFQPRIPKYSVDSIQIANFSIN
A9NWB5_______________MADNQRVHPTTEDVEKNAGEYENEKPSSPLVPKSSAASEKDGVDP-----PSGRQMRVQFPRDQVIPTRQIPKYYSRPPKRRNSCCRCLCYAICFLFALVAIIAITCGILYLVFEPRIPKYSIDSVRITNFSIN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain