SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69870

Length: 456 nt

UniGene Fasta

>sp_v2.0_unigene69870
CGTCGTGACCTTGGCTGTCACTCACTTCAGTATTTCATCTGATGGAAAATTTCTTGCAGGTGGAACAAGTGAAGGTGATATCTCTATAATCGAAGTGGGCAAAATGCGTCCATATCAAAAAGTTAAAAGAGCTCATACGTTTTTTATTACTTCAATGGAGTTTTCACGTGATTCAAGGTGAGTTCATGGAGCTGTAGCTTTAAGTTTGAATTTTGAAGCATCTTCATTTTACTTTATCATGGACAGTGAGTGGAGATCAAATGATATTGCAGGCTATCCATCTAAAGCCAATTTCTGTGGTTGTTGACCATTATGTGATTTATTTCCCTATGCTATATTTAATCAGTTTTATTTGGACAACACATGATGCTTATTATTAGAGTCTGACAAGTCACAAACGATCTGAGATTCCATGGATTTATGCACAGAGCATTGGTTTCTGCTTCTGGAGACTCA

Ace file of the UniGene sp_v2.0_unigene69870

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	prolactin regulatory element-binding protein [Arabidopsis thaliana] sp\|Q39221.4\|STLP2_ARATH RecName: Full=SEC12-like protein 2 gb\|AAC67323.1\| putative protein transport protein SEC12p [Arabidopsis thaliana] gb\|AAL67028.1\| putative protein transport protei	-	-	2.0e-07	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	protein transport protein sec12p	-	-	1.64514e-17	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to endoplasmic reticulum membrane	GO:0030176	Cellular Component	1.64514e-17	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.64514e-17	73%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	1.64514e-17	73%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ51

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 48 aas, putative chimeric sequence, your sequence is shorter than subject: 60 - 383

Fln protein: VVTLAVTHFSISSDGKFLAGGTSEGDISIIEVGKMRPYQKVKRAHTFFITSMEFSRDSR*

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTCAGTATTTCATCTGATGGAAAATTTCTTGCAGGTGGAACAAGTGAAGGTGATATCTCTATAATCGAAGTGGGCAAAATGCGTCCATATCAAAAAGTTAAAAGAGCTCATACGTTTTTTATTACTTCAATGGAGTTTTCACGTGATTCAAGGTGA___GTTCATGGAGCTGTAGCTTTAAGTTTGAATTTTGAAGCATCTTCATTTTACTTTATCATGGACAGTGAGTGGAGATCAAATGATATTGCAGGCTATCCATCTAAAGCCAATTTCTGTGGTTGTTGACCATTATGTGATTTATTTCCCTATGCTATATTTAATCAGTTTTATTTGGACAACACATGATGCTTATTATTAGAGTCTGACAAGTCACAAACGATCTGAGATTCCATGGATTTATGCACAGAGCATTGGTTTCTGCTTCTGGAGACTCA

Fln Alignment:

AllPineV4_rep_c98181___FSISSDGKFLAGGTSEGDISIIEVGKMRPYQKVKRAHTFFITSMEFSRDSR
B8LQ51_______________FNISSDGKFLATGTSEGDISIIKVSKMRPCQKVKGAHMFFVSSMEFSRDSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain