SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69856

Length: 391 nt

UniGene Fasta

>sp_v2.0_unigene69856
AAAGTACTGGTAAGATGTAAGGAAACAAATCTTTCTTTAAGTCATGAAAAATGTTTTATGGTGTTTACTTTGGGTGTTGTTTTAGGACATCATATTTCAGGAGAAGGCATCAAAGTTGACAGTTCCAAAGTTGAGGTCATTTCTAAGTTACCCATTCCAGATTGCCAAAGGGATGTTAGAAGTTTTCTGGGGTTTACTGGGTACTATAGGAGATTTATTGAAAACTTCACAAAAATAGCATCTCCTCTTTTCAAATTGCTTACTAAGGATTGTGAATTTAAATGGGATCCTGAATGTCAATCTGCATTTGAAGCCTTAAAAGCTAAAATATCTGAAGCACCTATTCTTAGAGGACCAAATTGGAAACTCCTTTCCATATTTCCACGGATGC

Ace file of the UniGene sp_v2.0_unigene69856

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon gag protein n=1 Tax=Asparagus officinalis RepID=Q2AA50_ASPOF	-	-	1.0e-31	53%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	44%
Blast2go	uncharacterized protein loc100854181	-	-	1.83806e-38	71%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Nitrite/sulphite reductase iron-sulphur/siroheam-binding site	IPR006066	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: Distance to subject end: 22 aas, atg_distance in limit (1-15): atg_distance = 8, No stop codon before M and low homology subject, your sequence is shorter than subject: 111 - 158

Fln protein: MVFTLGVVLGHHISGEGIKVDSSKVEVISKLPIPDCQRDVRSFLGFTGYYRRFIENFTKIASPLFKLLTKDCEFKWDPECQSAFEALKAKISEAPILRGPNWKLLSIFPRM

Protein Length: 112

Fln nts: AAAGTACTGGTAAGATGTAAGGAAACAAATCTTTCTTTAAGTCATGAAAAATGTTTT_-_ATGGTGTTTACTTTGGGTGTTGTTTTAGGACATCATATTTCAGGAGAAGGCATCAAAGTTGACAGTTCCAAAGTTGAGGTCATTTCTAAGTTACCCATTCCAGATTGCCAAAGGGATGTTAGAAGTTTTCTGGGGTTTACTGGGTACTATAGGAGATTTATTGAAAACTTCACAAAAATAGCATCTCCTCTTTTCAAATTGCTTACTAAGGATTGTGAATTTAAATGGGATCCTGAATGTCAATCTGCATTTGAAGCCTTAAAAGCTAAAATATCTGAAGCACCTATTCTTAGAGGACCAAATTGGAAACTCCTTTCCATATTTCCACGGATGC

Fln Alignment:

AllPineV4_c98156___HHISGEGIKVDSSKVEVISKLPIPDCQRDVRSFLGFTGYYRRFIENFTKIASPLFKLLTKDCEFKWDPECQSAFEALKAKISEAPILRGPNWKL
P92523_______________HIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain