SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69833

Length: 146 nt

UniGene Fasta

>sp_v2.0_unigene69833
AAGCTGGCGATTGCTTTTGGGATCATCAATACAAGACCTGGCACCCCCATCCTTGTCAGGAAGAACCTTAGAGTGTGTAGTGACTGCCACACTGCTGCCAAGTTCATCTCCAAGATTGTGAGGAGAGAAATTATTTTGAGAGATAC

Ace file of the UniGene sp_v2.0_unigene69833

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RIP1_RICCO	-	-	1.0e-13	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	pentatricopeptide repeat protein	-	-	3.28982e-19	85%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	UVR domain	IPR001943	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Hemimethylated DNA-binding domain	IPR011722	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 48 - 246

Fln protein: KLAIAFGIINTRPGTPILVRKNLRVCSDCHTAAKFISKIVRREIILRD

Protein Length: 49

Fln nts: AAGCTGGCGATTGCTTTTGGGATCATCAATACAAGACCTGGCACCCCCATCCTTGTCAGGAAGAACCTTAGAGTGTGTAGTGACTGCCACACTGCTGCCAAGTTCATCTCCAAGATTGTGAGGAGAGAAATTATTTTGAGAGATAC

Fln Alignment:

AllPineV4_rep_c98116___KLAIAFGIINTRPGTPILVRKNLRVCSDCHTAAKFISKIVRREIILRD
D5AAE0_______________KLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain