SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69824

Length: 339 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene69824
AGATGCGGAAAGAGCTGCAGGCTCCGATGGATAAACTACCTGCGTCCGGATCTCAAGCGTGGAGGATTCACAGAAGAAGAAGACGAACTAATCATCAAATTACATGCAGTTCTCGGAAACAAGTGGTCTCTTATTGCAGGGAGATTGCCAGGACGAACTGACAACGAGATAAAGAACTACTGGAACACTCACATCAGAAAAATTTGCTGAGCAAGGGACTCGACCCCAAGACCCACTGTCCCCTCGGCCAGGACTACAATTCCAACAATACCAGCGTCACCCGGCTTTCTCCTGACCATGAAATTCCGGCATTCCAAAACCCTAGAACGCCAGAGATAG

Ace file of the UniGene sp_v2.0_unigene69824

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-MYB transcription factor MYB18 (Fragment) n=2 Tax=Picea glauca RepID=C0JTD2_PICGL	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	myb-like transcription factor 1	-	-	83%

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Peptidase C48, SUMO/Sentrin/Ubl1	IPR003653	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW87

Fln msg: Overlapping hits, possible frame ERROR between 201 and 195, Distance to subject end: 72 aas, your sequence is shorter than subject: 113 - 232

Fln protein: RCGKSCRLRWINYLRPDLKRGGFTEEEDELIIKLHAVLGNKWSLIAGRLPGRTDNEIKNYWNTHxxxxLLSKGLDPKTHCPLGQDYNSNNTSVTRLSPDHEIPAFQNPRTPEI

Protein Length: 114

Fln nts: AGATGCGGAAAGAGCTGCAGGCTCCGATGGATAAACTACCTGCGTCCGGATCTCAAGCGTGGAGGATTCACAGAAGAAGAAGACGAACTAATCATCAAATTACATGCAGTTCTCGGAAACAAGTGGTCTCTTATTGCAGGGAGATTGCCAGGACGAACTGACAACGAGATAAAGAACTACTGGAACACTCACxxxxxxxxxxxxTTGCTGAGCAAGGGACTCGACCCCAAGACCCACTGTCCCCTCGGCCAGGACTACAATTCCAACAATACCAGCGTCACCCGGCTTTCTCCTGACCATGAAATTCCGGCATTCCAAAACCCTAGAACGCCAGAGATAG

Fln Alignment:

AllPineV4_rep_c98098___RCGKSCRLRWINYLRPDLKRGGFTEEEDELIIKLHAVLGNKWSLIAGRLPGRTDNEIKNYWNTHIxxNLLSKGLDPKTHCPLGQDYNSNNTSVTRLSPDHEIPAFQNPRTPEI
A9NW87_______________RCGKSCRLRWINYLRPDLKRGSFTEEEDELIIKLHSVVGNKWSLIAGRLPGRTDNEIKNYWNTHIxxKLLSKGIDPQSHRPLGQPYNSNNIAVSRSLPDHEIPALQNPRTPEI

SSRs (tot: 1)

Start position	End position	Sequence	Length
72	83	AGA AGA AGA AGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain