SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69786

Length: 263 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene69786
GCTCCAATATTTGCTTGGCCGTTTGAGATTTAGAAAACGACGATGAGCGAGCGGAAGATTATAGAGCTGGAGTCGGGATGGGAAATTATGCAGACGGCAATTACGAAGCTCAAGAACTTTCTGGAACGGGAAGGAATTCCCGGAGAGCCATTCAATTCCGAGGAGTCCTGCATCTATTACACGACTATTTTCAACATGTGCACGCAAAAGCCTCCGCATGATTATTCGCTGCAACTCTATGACAGATACAGGGAGTCTTTTGA

Ace file of the UniGene sp_v2.0_unigene69786 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cullin 1-like protein C [Petunia integrifolia subsp. inflata]	-	-	2.0e-20	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	protein	-	-	1.58479e-27	77%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Protein of unknown function DUF1442	IPR009902	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR74

Fln msg: Distance to subject end: 236 aas, your sequence is shorter than subject: 73 - 310

Fln protein: MSERKIIELESGWEIMQTAITKLKNFLEREGIPGEPFNSEESCIYYTTIFNMCTQKPPHDYSLQLYDRYRESF

Protein Length: 74

Fln nts: GCTCCAATATTTGCTTGGCCGTTTGAGATTTAGAAAACGACG_-_ATGAGCGAGCGGAAGATTATAGAGCTGGAGTCGGGATGGGAAATTATGCAGACGGCAATTACGAAGCTCAAGAACTTTCTGGAACGGGAAGGAATTCCCGGAGAGCCATTCAATTCCGAGGAGTCCTGCATCTATTACACGACTATTTTCAACATGTGCACGCAAAAGCCTCCGCATGATTATTCGCTGCAACTCTATGACAGATACAGGGAGTCTTTTGA

Fln Alignment:

AllPineV4_rep_c98033___TMSERKIIELESGWEIMQTAITKLKNFLEREGIPGEPFNSEESCIYYTTIFNMCTQKPPHDYSLQLYDRYRESF
A9NR74_______________TTSEREIIELEAGWEFMQKGITKLKNILE--GISEEQFNSEEYMRFYETVYKMCTQKPPHDYSQQLYDRYRESF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain