SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69725

Length: 315 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene69725
ATGGGGATGGTGGAAAAGAGTGGAGCTGCTGCAAACAGCGAAGCCATGACTTCAGTTTGTTTCTAGCTATACCAGGGGAAGCATACTTCTGAAAAACCCCAGACAAAGGCAGCACCGAGCCCCAATAAGCCTGTAACTTTATCAACTACTGGAAATACTGCTTTAGATGCGGCGAAGGCCGCTTGTTCCCGATGTCGTCAAGGCTTTTTCTGTTCTGATCATGGTTCCCAAGTTGGAGTTGTAAATTCTGGATTTTATAACTCGGTGGCTTCAGAGAGTGCTGCAAAACCTAAATCTACTTTTGTGCCCAAGTAC

Ace file of the UniGene sp_v2.0_unigene69725

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	disease resistance protein [Arabidopsis thaliana] sp\|Q9SE33.1\|RAR1_ARATH RecName: Full=Cysteine and histidine-rich domain-containing protein RAR1; AltName: Full=AtRAR1; AltName: Full=CHORD domain-containing protein RAR1; AltName: Full=Protein PPHB SUSCEPT	-	-	2.0e-18	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	disease resistance protein	-	-	1.14906e-43	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	1.14906e-43	66%
Blast2go	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	1.14906e-43	66%
Blast2go	respiratory burst involved in defense response	GO:0002679	Biological Process	1.14906e-43	66%
Blast2go	protein stabilization	GO:0050821	Biological Process	1.14906e-43	66%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	1.14906e-43	66%
Blast2go	Hsp90 protein binding	GO:0051879	Molecular Function	1.14906e-43	66%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	1.14906e-43	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cysteine/histidine-rich domain	IPR007051	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMI0

Fln msg: Overlapping hits, possible frame ERROR between 125 and 76, Distance to subject end: 77 aas, your sequence is shorter than subject: 105 - 223

Fln protein: GDGGKEWSCCKQRSHDFSLFLAIPxxxxxxxxxxxxxxxxxxKPVTLSTTGNTALDAAKAACSRCRQGFFCSDHGSQVGVVNSGFYNSVASESAAKPKSTFVPKY

Protein Length: 106

Fln nts: ATGGGGATGGTGGAAAAGAGTGGAGCTGCTGCAAACAGCGAAGCCATGACTTCAGTTTGTTTCTAGCTATACCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGCCTGTAACTTTATCAACTACTGGAAATACTGCTTTAGATGCGGCGAAGGCCGCTTGTTCCCGATGTCGTCAAGGCTTTTTCTGTTCTGATCATGGTTCCCAAGTTGGAGTTGTAAATTCTGGATTTTATAACTCGGTGGCTTCAGAGAGTGCTGCAAAACCTAAATCTACTTTTGTGCCCAAGTAC

Fln Alignment:

AllPineV4_rep_c97912___DGGKEWSCCKQRSHDFSLFLAIPGEAYF*KTxxxxxxxxxTKAAPSPNKPVTLSTTGNTALDAAKAACSRCRQGFFCSDHGSQVGVVNSGFYNSVASESAAKPKSTFVPK
A9NMI0_______________DGGKEWSCCKQRSHDFSLFLAIPG----CKTxxxxxxxxxTKAAPSPNKPVTLSSTGNTALDAAKAACARCRQGFFCSDHGSPVGVVNSGSYSSVPSESAAKPKPAFVPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain