SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69705

Length: 396 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene69705
AACTACATTCCCACAATGTTCAGAGCCGACTTTCCTCCATATGGTCAAGATTTCGCCGATCAAAAGCCCACAGGCCGATTTTCGAATGGCAAACTTTCAACAGATTTCATTGCTGCAGCATTGGGGCTCAAGGAGATGTTACCACCTTTTTTAGATCCTGATCTGAATACCCAAAATCTCGTTACAGGCGTTAGCTTTGCTTCTGCAGGAACTGGATATGATAACCTCACTGCCAGGATTGGTTCTGTGATACCAATGTGGAAACAAGCGGAATTATTCAGGGATTACCGTGTGATCTTGGAAGAGCGAGTGGGAGAGGATAAGGCATCCAAAATAATTCGAGAAGCCATAGTCCTATCCTGTTCGGGAACCAACGATTTTATTGAAAATTACTTT

Ace file of the UniGene sp_v2.0_unigene69705 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative GDSL-motif lipase/hydrolase [Arabidopsis thaliana]	-	-	1.0e-37	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	gdsl esterase lipase	-	-	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Transposon, En/Spm-like	IPR004242	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0U2

Fln msg: Distance to subject end: 178 aas, your sequence is shorter than subject: 132 - 359

Fln protein: NYIPTMFRADFPPYGQDFADQKPTGRFSNGKLSTDFIAAALGLKEMLPPFLDPDLNTQNLVTGVSFASAGTGYDNLTARIGSVIPMWKQAELFRDYRVILEERVGEDKASKIIREAIVLSCSGTNDFIENYF

Protein Length: 133

Fln nts: AACTACATTCCCACAATGTTCAGAGCCGACTTTCCTCCATATGGTCAAGATTTCGCCGATCAAAAGCCCACAGGCCGATTTTCGAATGGCAAACTTTCAACAGATTTCATTGCTGCAGCATTGGGGCTCAAGGAGATGTTACCACCTTTTTTAGATCCTGATCTGAATACCCAAAATCTCGTTACAGGCGTTAGCTTTGCTTCTGCAGGAACTGGATATGATAACCTCACTGCCAGGATTGGTTCTGTGATACCAATGTGGAAACAAGCGGAATTATTCAGGGATTACCGTGTGATCTTGGAAGAGCGAGTGGGAGAGGATAAGGCATCCAAAATAATTCGAGAAGCCATAGTCCTATCCTGTTCGGGAACCAACGATTTTATTGAAAATTACTTT

Fln Alignment:

AllPineV4_rep_c97873___NYIPTMFRADFPPYGQDFADQKPTGRFSNGKLSTDFIAAALGLKEMLPPFLDPDLNTQNLVTGVSFASAGTGYDNLTARIGSVIPMWKQAELFRDYRVILEERVGEDKASKIIREAIVLSCSGTNDFIENYF
A9P0U2_______________NNISTVLKANFLPYGRDFTGHRPTGRFSNGRLTTDFLAEGLGIKETVPAYLDPGLTPEDLLTGVSFASAGTGYDNRTAKAFSVIPIWKEVEYFKEYGQKLGKISGAENATRILNEAIVIVSMGSNDFLVNYY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain