SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69702

Length: 375 nt

UniGene Fasta

>sp_v2.0_unigene69702
AATGTCTCTTGATTGACAGATTGCTCAAAATTGCCGATGAAGATAACGAACTCTTTCTGCTCAAGCTCCGCAGTAGAATCGACAAAGTCGCTATCGAAATACCCAAAATCGAGGTCCGCTATGAACACTTGAACGTGGATGCAGATGTATATGTTGGTAGCAGAGCACTGCCTACCATTCCCAACTTCACTTTAAATATGATGGAGGCTTTTTTAAGCTGGCTGAGGATTTTTCCTAATAGGAAGAAACCCCTTTCGATCCTCCATGATGTTAGCGGTATCATAAAACCATGCAGAATGACTTTGCTTTTGGGACCGCCAGGGTCTGGGAAAACACTTTACTCTTGGCTTTGGCTGGCAAGCTCGATTCAGAATT

Ace file of the UniGene sp_v2.0_unigene69702

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter, putative n=1 Tax=Ricinus communis RepID=B9RJZ6_RICCO	-	-	2.0e-39	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	atp-binding cassette	-	-	4.2039e-45	84%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN70

Fln msg: Distance to subject end: 238 aas, your sequence is shorter than subject: 124 - 443

Fln protein: CLLIDRLLKIADEDNELFLLKLRSRIDKVAIEIPKIEVRYEHLNVDADVYVGSRALPTIPNFTLNMMEAFLSWLRIFPNRKKPLSILHDVSGIIKPCRMTLLLGPPGSGKTLYSWLWLASSIQN

Protein Length: 125

Fln nts: AATGTCTCTTGATTGACAGATTGCTCAAAATTGCCGATGAAGATAACGAACTCTTTCTGCTCAAGCTCCGCAGTAGAATCGACAAAGTCGCTATCGAAATACCCAAAATCGAGGTCCGCTATGAACACTTGAACGTGGATGCAGATGTATATGTTGGTAGCAGAGCACTGCCTACCATTCCCAACTTCACTTTAAATATGATGGAGGCTTTTTTAAGCTGGCTGAGGATTTTTCCTAATAGGAAGAAACCCCTTTCGATCCTCCATGATGTTAGCGGTATCATAAAACCATGCAGAATGACTTTGCTTTTGGGACCGCCAGGGTCTGGGAAAACACTTTACTCTTGGCTTTGGCTGGCAAGCTCGATTCAGAATT

Fln Alignment:

AllPineV4_rep_c97867___LIDRLLKIADEDNELFLLKLRSRIDKVAIEIPKIEVRYEHLNVDADVYVGSRALPTIPNFTLNMMEAFLSWLRIFPNRKKPLSILHDVSGIIKPCRMTLLLGPPGSGKTLYSWLWLASSIQN
B8LN70_______________LIDRLLGVTDQDNERFLLKLRQRLDGVGIIIPEIEIRFQDLNISADVYVGSRALPTLINWTVNIVEDALETLRLRKTQKKNLTILHDISGIVKSGRLTLLLGPPASGKTTL-LLALTGKLQN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain