SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69662

Length: 224 nt

UniGene Fasta

>sp_v2.0_unigene69662
AATGTGTATTATGCCTGTGTGTGCTGATTTATTGGCTCTGGAACTAGGTAAGCAGATCCACGGTTATGCCATAAGATGTGGATTTGAAACTGATATTGTTGTGGTCAATGGACTCGTAAACATGTATGCCAAATGTGGGAATGTTAACATTGCCGGCAAACTCTTTGAAAGGATGCCTCAACGTGATCTTTTGTTATGGACAGCAATAATTGCTGCTTATTCCC

Ace file of the UniGene sp_v2.0_unigene69662

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative pentatricopeptide repeat protein [Gossypium hirsutum]	-	-	1.0e-15	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	pentatricopeptide repeat-containing protein	-	-	4.01956e-28	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	mRNA modification	GO:0016556	Biological Process	4.01956e-28	70%
Blast2go	endonuclease activity	GO:0004519	Molecular Function	4.01956e-28	70%
Blast2go	chloroplast	GO:0009507	Cellular Component	4.01956e-28	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 296 aas, your sequence is shorter than subject: 74 - 795

Fln protein: MCIMPVCADLLALELGKQIHGYAIRCGFETDIVVVNGLVNMYAKCGNVNIAGKLFERMPQRDLLLWTAIIAAYS

Protein Length: 75

Fln nts: AATGTGTATTATGCCTGTGTGTGCTGATTTATTGGCTCTGGAACTAGGTAAGCAGATCCACGGTTATGCCATAAGATGTGGATTTGAAACTGATATTGTTGTGGTCAATGGACTCGTAAACATGTATGCCAAATGTGGGAATGTTAACATTGCCGGCAAACTCTTTGAAAGGATGCCTCAACGTGATCTTTTGTTATGGACAGCAATAATTGCTGCTTATTCCC

Fln Alignment:

AllPineV4_rep_c97759___MCIMPVCADLLALELGKQIHGYAIRCGFETDIVVVNGLVNMYAKCGNVNIAGKLFERMPQRDLLLWTAIIAAYS
B8LQA8_______________LSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain