SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69519

Length: 430 nt

UniGene Fasta

>sp_v2.0_unigene69519
AGACGCGGGATCTTCCGAGCGCGCAGCCCTATTCGCTCTTCGACACCTGCTACGACCTGTCTGGCTACAGCCAGGTCAGGATTCCGACTATAACTTTTCATTTCCAGAACAACGCCGATGTGAGTGTGAGCGCCCTCGGGACTTTGATATCCCTTCAGAGTGACGGATCCCAGGTGTGCCTGGCATTCGCACAGGCACCGCAATCGGACAGTGTTAACATTATCGGGAACTTCCAACAGCAGCAGATGCAGGTTGCTTTTGACACGGCAGGCGGAGAATTGGTTTCGCCTCTGGTTCCTGCGCTACTTAGCACTGCTCCAATAATTCAAATAATACCAGTAAATTCCCTGTACGTTTCCGCAAAAGACGGAGGTTTTAGCCCCATCCTAGCCTTATCGTGGACAATGTCTATCCTTCAACTTTCTATAAC

Ace file of the UniGene sp_v2.0_unigene69519

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	aspartic proteinase nepenthesin-1-like	-	-	4.69813e-41	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase A1	IPR001461	-	0.0	-
Sma3	Peptidase aspartic, active site	IPR001969	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV32

Fln msg: STOP codon was not found. Distance to subject end: 41 aas, your sequence is shorter than subject: 142 - 479

Fln protein: TRDLPSAQPYSLFDTCYDLSGYSQVRIPTITFHFQNNADVSVSALGTLISLQSDGSQVCLAFAQAPQSDSVNIIGNFQQQQMQVAFDTAGGELVSPLVPALLSTAPIIQIIPVNSLYVSAKDGGFSPILALSWTMSILQLSI

Protein Length: 143

Fln nts: AGACGCGGGATCTTCCGAGCGCGCAGCCCTATTCGCTCTTCGACACCTGCTACGACCTGTCTGGCTACAGCCAGGTCAGGATTCCGACTATAACTTTTCATTTCCAGAACAACGCCGATGTGAGTGTGAGCGCCCTCGGGACTTTGATATCCCTTCAGAGTGACGGATCCCAGGTGTGCCTGGCATTCGCACAGGCACCGCAATCGGACAGTGTTAACATTATCGGGAACTTCCAACAGCAGCAGATGCAGGTTGCTTTTGACACGGCAGGCGGAGAATTGGTTTCGCCTCTGGTTCCTGCGCTACTTAGCACTGCTCCAATAATTCAAATAATACCAGTAAATTCCCTGTACGTTTCCGCAAAAGACGGAGGTTTTAGCCCCATCCTAGCCTTATCGTGGACAATGTCTATCCTTCAACTTTCTATAAC

Fln Alignment:

AllPineV4_rep_c97401___TRDLPSAQPYSLFDTCYDLSGYSQVRIPTITFHFQNNADVSVSALGTLISLQSDGSQVCLAFAQAPQSDSVNIIGNFQQQQMQVAFDTAGGEL
A9NV32_______________TRNLPSAKPFSILDTCYDLSSYSQVRIPTITFHFQNNADVAVSAVGILFTIQSDGSQVCLAFASASQSISTNIIGNFQQQRMRVAFDTGAGRI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain