SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69453

Length: 359 nt

Origin of reads: Inia v1 Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene69453
AATGTATATTTTCCGTGCTGTCGATCCTCGACGTCATCAGACCGGCAGCGGCAACGGCTCTACTGAACTTTTTTGAGCCGGCAACAATTTTTTCTCTGTACTCAACAGCAGCTATGGGCCGAGTGATTGGACTGGAACCAACCTTAACTGTTTCCATTTTGCCACGATGTATTACTGTTGCACTAGCATTGAGCATTGTCTCGCTTTTTGATGCTGCAAATCCTTCCCTTACAGCAGCTGTCGTGGTTTTAACGGGACTGGTTGGAGCAAAATTTTGCACAAATATTGCTCGACAAGCTTGGTTTGGATGATCCTATTGCACGAGGAATGGCTACAGCCTCCAGTGCTCATGGATTGGG

Ace file of the UniGene sp_v2.0_unigene69453

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative membrane protein [Arabidopsis thaliana] gb\|AAG23435.1\|AC084165_1 unknown protein [Arabidopsis thaliana] gb\|AAG50795.1\|AC074309_12 unknown protein [Arabidopsis thaliana] gb\|AAK63984.1\| At1g32080/F3C3_12 [Arabidopsis thaliana] gb\|AAM26636.1\| At1g32	-	-	2.0e-22	77%
FL-Next	tr=At1g32080/F3C3_12; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%
Blast2go	membrane protein	-	-	7.02206e-22	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	7.02206e-22	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	LrgB-like protein	IPR007300	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9FVQ4

Fln msg: Separated hits, possible frame ERROR between 227 and 271, Distance to subject end: 44 aas, your sequence is shorter than subject: 119 - 512

Fln protein: CIFSVLSILDVIRPAAATALLNFFEPATIFSLYSTAAMGRVIGLEPTLTVSILPRCITVALALSIVSLFDAANPxxxxxxxxxxxxxxxxNFAQILLDKLGLDDPIARGMATASSAHGL

Protein Length: 120

Fln nts: AATGTATATTTTCCGTGCTGTCGATCCTCGACGTCATCAGACCGGCAGCGGCAACGGCTCTACTGAACTTTTTTGAGCCGGCAACAATTTTTTCTCTGTACTCAACAGCAGCTATGGGCCGAGTGATTGGACTGGAACCAACCTTAACTGTTTCCATTTTGCCACGATGTATTACTGTTGCACTAGCATTGAGCATTGTCTCGCTTTTTGATGCTGCAAATCCTTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAATTTTGCACAAATATTGCTCGACAAGCTTGGTTTGGATGATCCTATTGCACGAGGAATGGCTACAGCCTCCAGTGCTCATGGATTGGG

Fln Alignment:

AllPineV4_rep_c97219___ATIFSLYSTAAMGRVIGLEPTLTVSILPRCITVALALSIVSLFDAANPSxxxxxxxxxxxxxxxNFAQILLDKLGLDDPIARGMATASSAHGL
Q9FVQ4_______________STVFSLYSTALVGRLVGLEPSLTVSILPRCITVALALSIVSLFEGTNSSxxxxxxxxxxxxxxxNFVQVVLDKLRLRDPIARGIATASSAHGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain