SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69440

Length: 345 nt

Origin of reads: Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene69440
CAATCACTTCCCCTTAGGATCAGAACACACAATTTCTCCATGACTTAGGATCTAAATACTGAATGTATAAATACTGCAGAGTGAGCAGGTAAGCGAGAAGAATCCAAGATTTCTAATATAAACGGAAGGAATTTAGGGGGTAAAAATGCAAGTAATCAACAGGCTACGGCAGCTGGACGCGTTTCCAAAGATCAATGAGGATTTCTACAGCAGGACTCTATCTGGTGGTGTCATTACACTCGTCTCCTCCATTGTGATGGTCCTGCTTTTCTTCTCCGAATTTTCATTATTCCTTAATCCAGTCACTGAGAGTGAGCTTATAGTCGACACATCAAGGGGAGAGAC

Ace file of the UniGene sp_v2.0_unigene69440

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Endoplasmic reticulum vesicle transporter protein n=3 Tax=Arabidopsis RepID=Q9LM16_ARATH	-	-	2.0e-14	65%
FL-Next	tr=Endoplasmic reticulum vesicle transporter protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%
Blast2go	endoplasmic reticulum vesicle transporter protein	-	-	6.2667e-17	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	6.2667e-17	87%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	6.2667e-17	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1692	IPR012936	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F4I1A5

Fln msg: Distance to subject end: 270 aas, your sequence is shorter than subject: 66 - 338

Fln protein: MQVINRLRQLDAFPKINEDFYSRTLSGGVITLVSSIVMVLLFFSEFSLFLNPVTESELIVDTSRGE

Protein Length: 67

Fln nts: CAATCACTTCCCCTTAGGATCAGAACACACAATTTCTCCATGACTTAGGATCTAAATACTGAATGTATAAATACTGCAGAGTGAGCAGGTAAGCGAGAAGAATCCAAGATTTCTAATATAAACGGAAGGAATTTAGGGGGTAAAA_-_ATGCAAGTAATCAACAGGCTACGGCAGCTGGACGCGTTTCCAAAGATCAATGAGGATTTCTACAGCAGGACTCTATCTGGTGGTGTCATTACACTCGTCTCCTCCATTGTGATGGTCCTGCTTTTCTTCTCCGAATTTTCATTATTCCTTAATCCAGTCACTGAGAGTGAGCTTATAGTCGACACATCAAGaGGAGAGAC

Fln Alignment:

AllPineV4_rep_c97194___VINRLRQLDAFPKINEDFYSRTLSGGVITLVSSIVMVXXXXXXXXXXXNPVTESELIVDTSRGE
F4I1A5_______________VMNRLRNLDAYPKINEDFYRRTLSGGVITLASSIVMLILFFSELQLYIHPVTETQLRVDTSRGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain