SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69420

Length: 215 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene69420
GCTGCAAAACAGTCTGTTTGCTTTAGAACCTGATCATGTTGGATATTATGTACTCCTGTCAAATATATATGCAGGGGCTGGCAGGTGGGATGATGCAGCAAAAGTGAGAACAATGATGAAAGACAAAGGTTTGAAAAAGACTCCAGGATGGAGCTGGATTAAAGTGGATAGCAGGGTTCATGTATTCACTGTTGGTGACAGATCACATCCAGAGT

Ace file of the UniGene sp_v2.0_unigene69420 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SY02.1\|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb\|AAD15348.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB77760.1\| hypothetical protein	-	-	5.0e-19	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.68099e-25	78%

Source	InterPros	Term	Type	Identity
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAH8

Fln msg: Distance to subject end: 111 aas, your sequence is shorter than subject: 71 - 210

Fln protein: LQNSLFALEPDHVGYYVLLSNIYAGAGRWDDAAKVRTMMKDKGLKKTPGWSWIKVDSRVHVFTVGDRSHPE

Protein Length: 72

Fln nts: GCTGCAAAACAGTCTGTTTGCTTTAGAACCTGATCATGTTGGATATTATGTACTCCTGTCAAATATATATGCAGGGGCTGGCAGGTGGGATGATGCAGCAAAAGTGAGAACAATGATGAAAGACAAAGGTTTGAAAAAGACTCCAGGATGGAGCTGGATTAAAGTGGATAGCAGGGTTCATGTATTCACTGTTGGTGACAGATCACATCCAGAGT

Fln Alignment:

AllPineV4_rep_c97147___LFALEPDHVGYYVLLSNIYAGAGRWDDAAKVRTMMKDKGLKKTPGWSWIKVDSRVHVFTVGDRSHPE
D5AAH8_______________LFKLRPDRAGTYVALSNIYSAAGRWDEAAKLRRLMNDRGVKKEPGYSWVQVKNMVHTFSVGDISHPQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
188		33		66	0.997455

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain