SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69405

Length: 369 nt

UniGene Fasta

>sp_v2.0_unigene69405
CGTCGTGAGCTTGGTGTATCAAGGAACCAGGATGCAGCTGGATTGAGGTAAAGAGCAGGGTACATGCATTCCTTGTGGGAGACAAATCACACCCAGAAACAGAGAAGATATATGCAATGCTGGCCATATTAGCAGAGCAGATGAAGGAAGCAGGTTATGTGCCCATCAGGGGCTTTGTTTTGCATGATGCAGATGAGGAATAGAAGGAACCTATCCTGTACTGTCACAATGAGAATCCCGCCATTGCATTTAAAGTTATGAGTACATCCATTGTGTTTTCTGTTGGCGTAATCAAGAACCCCTGAATATGCAGTGATTGGCGACAATGGCATAAAATCCATTCTCCAATGGTGTTAACTAAAGTTATTG

Ace file of the UniGene sp_v2.0_unigene69405

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE	-	-	3.0e-25	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	pentatricopeptide repeat protein	-	-	2.68887e-32	65%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 21 aas, your sequence is shorter than subject: 122 - 246

Fln protein: S*AWCIKEPGCSWIEVKSRVHAFLVGDKSHPETEKIYAMLAILAEQMKEAGYVPIRGFVLHDADEE*KEPILYCHNENPAIAFKVMSTSIVFSVGVIKNP*ICSDWRQWHKIHSPMVLTKVI

Protein Length: 123

Fln nts: CGTCGTGAGCTTGGTGTATCAAGGAACCAGGATGCAGCTGGATTGAGGTAAAGAGCAGGGTACATGCATTCCTTGTGGGAGACAAATCACACCCAGAAACAGAGAAGATATATGCAATGCTGGCCATATTAGCAGAGCAGATGAAGGAAGCAGGTTATGTGCCCATCAGGGGCTTTGTTTTGCATGATGCAGATGAGGAATAGAAGGAACCTATCCTGTACTGTCACAATGAGAATCCCGCCATTGCATTTAAAGTTATGAGTACATCCATTGTGTTTTCTGTTGGCGTAATCAAGAACCCCTGAATATGCAGTGATTGGCGACAATGGCATAAAATCCATTCTCCAATGGTGTTAACTAAAGTTATTG

Fln Alignment:

AllPineV4_rep_c97101___KEPGCSWIEVKSRVHAFLVGDKSHPETEKIYAMLAILAEQMKEAGYVPIRGFVLHDADEE*KEPILYCHNENPAIAFKVMSTSIVFSVGVIKNP*ICSDWRQWHKIHSPMVLTKVI
D5AAE0_______________KQPGCSWIEVKNKVHTFMVEDKSHPQTEEIYSTLEELARQMEAAGYVPDTNFVLHDVEMEQKEHSLYHHSEKLAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREII

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
59		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain