SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69398

Length: 311 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene69398
ATGGGGAGATCGAGGGTTTCAAAGCTCCGGCCTACATAAAGCGGTGTATCTCTTATCATTGTTTGGAGATCGAGGGTGCAGTCTTAAGAACGTCCTCGTTTGGATTCCAGGCAGGAGCAGCTGGGGCGTTGAAGATACGAAGTGCCCATTCACTGGTACTGTTTCAATAAGAGGTCGTATATTAGCTGGAACGTGTTACAGTGCTAAAATGACACGGACAATTATTGTCCGTAGGGACTATCTCCATTATGTCAAGAAATATCAGAGGTATGAGAAGAGACATTCGAACATACCAGCCCACATTTCACCTT

Ace file of the UniGene sp_v2.0_unigene69398

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH	-	-	2.0e-25	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	40s ribosomal protein s11	-	-	9.98429e-34	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	9.98429e-34	96%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	9.98429e-34	96%
Blast2go	membrane	GO:0016020	Cellular Component	9.98429e-34	96%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosomal protein S17	IPR000266	-	-
Sma3	Protein of unknown function DUF707	IPR007877	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN19

Fln msg: Distance to subject end: 46 aas, atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning, your sequence is shorter than subject: 103 - 160

Fln protein: WGDRGFQSSGLHKAVYLLSLFGDRGCSLKNVLVWIPGRSSWGVEDTKCPFTGTVSIRGRILAGTCYSAKMTRTIIVRRDYLHYVKKYQRYEKRHSNIPAHISP

Protein Length: 104

Fln nts: _-_ATGGGGAGATCGAGGGTTTCAAAGCTCCGGCCTACATAAAGCGGTGTATCTCTTATCATTGTTTGGAGATCGAGGGTGCAGTCTTAAGAACGTCCTCGTTTGGATTCCAGGCAGGAGCAGCTGGGGCGTTGAAGATACGAAGTGCCCATTCACTGGTACTGTTTCAATAAGAGGTCGTATATTAGCTGGAACGTGTTACAGTGCTAAAATGACACGGACAATTATTGTCCGTAGGGACTATCTCCATTATGTCAAGAAATATCAGAGGTATGAGAAGAGACATTCGAACATACCAGCCCACATTTCACCTT

Fln Alignment:

AllPineV4_rep_c97084___DTKCPFTGTVSIRGRILAGTCYSAKMTRTIIVRRDYLHYVKKYQRYEKRHSNIPAHISP
A9NN19_______________DKKCPFTGNVSIRGRILAGTCYSAKMTRTIIVRRDYLHFVKKYQRYEKRHSNIPAHISP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain