SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69385

Length: 440 nt

Origin of reads: Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene69385
CGTCGTGACCTTGGCTGTCACTCAATCCAGTATTTTACTGGAGAATAATTTTCATGCTAAAGTAGCTGATTTTGGTCTTGCTAAGCAGGCTCCGGAGGGTCGGGGAAACTATTTATCTACTCGTGTAATGGGCACATTTGGGTATGTAGCTCCCGAATATGCTATGACTGGTCATCTTCTGGTAAAAAGTGATGTATATAGCTATGGAGTCGTTTTGCTGGAACTGTTGTCAGGAAGGAAACCTGTTGATATGTCTCAACCTTCTGGGCAGGAAAACCTTGTAACATGGGTTAGGATCTTTGCCAGGATTTAGCTTTTGTTTTGTTTCCATCATATCCGAGTTCATTTAAAAGATATATGATGAAGATGAGTCATCATCCAAAATCTTATAAATCGCTCACAACTTATTTTGTTCTAGCCGCAATGGAAATATTCTTTCA

Ace file of the UniGene sp_v2.0_unigene69385

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAK-like ser/thr protein kinase n=1 Tax=Glycine max RepID=C6ZRX4_SOYBN	-	-	3.9937e-43	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	nak-like ser thr protein kinase	-	-	0.0	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	kinase activity	GO:0016301	Molecular Function	0.0	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	94%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUW8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 71 aas, your sequence is shorter than subject: 104 - 465

Fln protein: VVTLAVTQSSILLENNFHAKVADFGLAKQAPEGRGNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPSGQENLVTWVRIFARI*

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCAGTATTTTACTGGAGAATAATTTTCATGCTAAAGTAGCTGATTTTGGTCTTGCTAAGCAGGCTCCGGAGGGTCGGGGAAACTATTTATCTACTCGTGTAATGGGCACATTTGGGTATGTAGCTCCCGAATATGCTATGACTGGTCATCTTCTGGTAAAAAGTGATGTATATAGCTATGGAGTCGTTTTGCTGGAACTGTTGTCAGGAAGGAAACCTGTTGATATGTCTCAACCTTCTGGGCAGGAAAACCTTGTAACATGGGTTAGGATCTTTGCCAGGATTTAGCTTTTGTTTTGTTTCCATCATATCCGAGTTCATTTAAAAGATATATGATGAAGATGAGTCATCATCCAAAATCTTATAAATCGCTCACAACTTATTTTGTTCTAGCCGCAATGGAAATATTCTTTCA

Fln Alignment:

AllPineV4_rep_c97052___SSILLENNFHAKVADFGLAKQAPEGRGNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPSGQENLVTWVR
A9NUW8_______________SNILLDSEYNAKLSDFGLAKDGPEGDNTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLELLTGRRSMDKNRPSGEHNLVAWAR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain