SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69358

Length: 390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene69358
GTGCCAACCTCATGGCAATGGCGGCACCTCTGATGTATTGAGGATTTCGCAAGAGTGTATGAACAGAGTCGATTGAAGGAGCGATTGGATACTTTACACCGCCAAGGCACCGGAACAAAACTCTCCAGCTATGCATCTCTGTTAGAAGACTGCGTTCGCAGGAAAGCTCTGGCAGAAGGCAAACTAGTCCATGCCCACTGACAGAATCGCAGGATATGCACAGAATGGAGAAATTGGTGAAGCCCACACAGTTTTCCAGAATATACCTGAACGAGATGTCGTAGCGTGGAATGCCATGATTACAGCTTATGCGCAGAATGGATTTTTTCAGGAAGCATTAGCGGTTTTTGGGCAAATGCAAGGAACAGGTACGTATCCAAGCTCTGTTAC

Ace file of the UniGene sp_v2.0_unigene69358 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana] sp\|Q9SZT8.1\|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37380, chloroplastic; Flags: Precursor emb\|CAB38205.1\| putative protein [Arabidopsis thali	-	-	6.0e-09	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	pentatricopeptide repeat-containing	-	-	5.36086e-14	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: warning!, putative chimeric sequence! or repetitive structureUnexpected stop codon in the beginning of your sequence, Distance to subject end: 254 aas, your sequence is shorter than subject: 130 - 644

Fln protein: VPTSWQWRHL*CIEDFARVYEQSRLKERLDTLHRQGTGTKLSSYASLLEDCVRRKALAEGKLVHAxxxxIAGYAQNGEIGEAHTVFQNIPERDVVAWNAMITAYAQNGFFQEALAVFGQMQGTGTYPSSV

Protein Length: 131

Fln nts: GTGCCAACCTCATGGCAATGGCGGCACCTCTGATGTATTGAGGATTTCGCAAGAGTGTATGAACAGAGTCGATTGAAGGAGCGATTGGATACTTTACACCGCCAAGGCACCGGAACAAAACTCTCCAGCTATGCATCTCTGTTAGAAGACTGCGTTCGCAGGAAAGCTCTGGCAGAAGGCAAACTAGTCCATGCCCAxxxxxxxxxAATCGCAGGATATGCACAGAATGGAGAAATTGGTGAAGCCCACACAGTTTTCCAGAATATACCTGAACGAGATGTCGTAGCGTGGAATGCCATGATTACAGCTTATGCGCAGAATGGATTTTTTCAGGAAGCATTAGCGGTTTTTGGGCAAATGCAAGGAACAGGTACGTATCCAAGCTCTGTTAC

Fln Alignment:

AllPineV4_c96993___EQSRLKERLDTLH---RQGTGTKLSSYASLLEDCVRRKALAEGKLVHAHxxxIAGYAQNGEIGEAHTVFQNIPERDVVAWNAMITAYAQNGFFQEALAVFGQMQGTGTYPSS
B8LLJ0_______________KQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHxxxISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain