SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69357

Length: 404 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene69357
GAATCTATGCTCTGCTTGAGTGCCTGTCTCAGCAGATGGAGCAGGCAGGGTATGTGCCTGACACAGGCTTGTTTTACATGATGTGGAAGAGGAAGAGAAGGAGCACATGCTTTCCACTCACAGTGAGAAGCTGGCCATTGCTTTTGCTCTTATTAGCACATACCCTAGGACATCTATCCACATCACCAAAATCTCCGTGTCTGTGGTGACTGCCACAATGCCACTAAGTTGATCTCTAAGATTGTTAAACGAGAAATAATTGTACGGGATAAAAGCCGTTTTCATCATTTTAAGAATGGATTATGTTCATGTGGGGATTACTGGTGATGTTAATTAAGACAACAAATAGAAGTTTGTCTAGCTAGAAACTGCTGCAGATTAGTTCGCTCAACTTGTAAGTCAGA

Ace file of the UniGene sp_v2.0_unigene69357 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Pinus nigra RepID=B3U1V2_9CONI	-	-	9.99967e-42	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	pentatricopeptide repeat-containing protein	-	-	2.66205e-41	90%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Separated hits, possible frame ERROR between 65 and 71, and overlapping frame ERROR between 190 and 187, your sequence is shorter than subject: 109 - 312

Fln protein: IYALLECLSQQMEQAGYVPDxxxVLHDVEEEEKEHMLSTHSEKLAIAFALISTYPRTSIHxxxxLRVCGDCHNATKLISKIVKREIIVRDKSRFHHFKNGLCSCGDYW*

Protein Length: 110

Fln nts: GAATCTATGCTCTGCTTGAGTGCCTGTCTCAGCAGATGGAGCAGGCAGGGTATGTGCCTGACACxxxxxxTGTTTTACATGATGTGGAAGAGGAAGAGAAGGAGCACATGCTTTCCACTCACAGTGAGAAGCTGGCCATTGCTTTTGCTCTTATTAGCACATACCCTAGGACATCTATCCACATxxxxxxxxxTCTCCGTGTCTGTGGTGACTGCCACAATGCCACTAAGTTGATCTCTAAGATTGTTAAACGAGAAATAATTGTACGGGATAAAAGCCGTTTTCATCATTTTAAGAATGGATTATGTTCATGTGGGGATTACTGGTGATGTTAATTAAGACAACAAATAGAAGTTTGTCTAGCTAGAAACTGCTGCAGATTAGTTCGCTCAACTTGTAAGTCAGA

Fln Alignment:

AllPineV4_rep_c96983___IYALLECLSQQMEQAGYVPDTxxVLHDVEEEEKEHMLSTHSEKLAIAFALISTYPRTSIHITxNLRVCGDCHNATKLISKIVKREIIVRDKSRFHHFKNGLCSCGDYW
D5ADG9_______________IYAMLETLARQMEAVGYVPCTxxVLHDVEEEIKENMLFAHSEKLAIAFGLISTRSGTSIRITxNLRVCGDCHSATKFISKIVKREIIMRDLNRFHHFKDGLCSCGDYW

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
301	33		66		0.997452
302		33		66	0.997452
303	33		66		0.997452
304		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain